Browse Element(s) Details


Os.27444.1.S1_at

Description gb:AK102496.1
DB_XREF= gi:32987705
TID=Os.27444.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095A20, full insert sequence.
FL= gb:AK100164.1 gb:AK102496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0343011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27444.1.S1_at--870--10491Chr03:1460896..1460920 (25 bp)
TTCAAACAATCCTCAGTCTCCTGGG
LOC_Os03g03430
Os.27444.1.S1_at--1015--8951Chr03:1460944..1460968 (25 bp)
TGAAAGATCGCCTGCTTCTCAAGCA
LOC_Os03g03430
Os.27444.1.S1_at--1001--3631Chr03:1460970..1460994 (25 bp)
CTTCGCGTAGTTCACCTAATTCAAC
LOC_Os03g03430
Os.27444.1.S1_at--954--1271Chr03:1461336..1461360 (25 bp)
AGATCAGCATATCTCTTGTACTGTT
LOC_Os03g03430
Os.27444.1.S1_at--1126--6911Chr03:1461395..1461419 (25 bp)
GTATGGCTTAGCATCTGGACATCGC
LOC_Os03g03430
Os.27444.1.S1_at--310--831Chr03:1461425..1461449 (25 bp)
ATGGAAGTCTCACTACCTACTGTAG
LOC_Os03g03430
Os.27444.1.S1_at--1103--6931Chr03:1461446..1461470 (25 bp)
GTAGATGTATTTTTGTCAGCTTGCA
LOC_Os03g03430
Os.27444.1.S1_at--1024--7751Chr03:1461587..1461611 (25 bp)
GGTGCATTCACTGATGGCTATCCAC
LOC_Os03g03430
Os.27444.1.S1_at--175--8311Chr03:1461602..1461626 (25 bp)
GGCTATCCACACCATTTAAGCACTG
LOC_Os03g03430
Os.27444.1.S1_at--196--2731Chr03:1461619..1461643 (25 bp)
AAGCACTGTACAAGTCCTCTCATAT
LOC_Os03g03430
Os.27444.1.S1_at--1006--891Chr03:1461670..1461694 (25 bp)
AGGCGCAAGCTTATGTTTGTGATGC
LOC_Os03g03430
Target Sequence 
TTCAAACAATCCTCAGTCTCCTGGGACTTTGCCGACAATAATTTNTCCTGAAAGATCGCCTGCTTCTCAAGCACCTTCGC
GTAGTTCACCTAATTCAACTCAGGTCTCAAGGAATTCGTAAAACGGCGTTGAGAGCTAAAGAGCTCTAAGGACAACGTTT
CCTGAGAAATGGTAAAATGTCAACATAAACAGATTAAGACATTTTGAGCTTAGGACTGAATTATACAGATCAGCATATCT
CTTGTACTGTTGATGCTTATTTGTTGATTACATGCTTGTATANACGTATGGCTTAGCATCTGGACATCGCTATAGATGGA
AGTCTCACTACCTACTGTAGATGTATTTTTGTCAGCTTGCAATTACCATTGCAGAGGAAAGCTTGAAGATAAAAATGTAA
AAGGAATGCACTAGTATGCATTTGTGCTGTTCTTGTATGCATGCCCCCATCATTTTAATGATCAGCAAGCAGATGTTGGT
GCATTCACTGATGGCTATCCACACCATTTAAGCACTGTACAAGTCCTCTCATATTGTATCAGAAATTCAGATTAGTGATA
AGGCGCAAGCTTATGTTTGTGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis