Browse Element(s) Details


Os.17794.1.S1_at

Description gb:CB636799
DB_XREF= gi:29631790
DB_XREF=OSJNEa02L01.r
CLONE=OSJNEa02L01
TID=Os.17794.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17794 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_171661.1 (A.thaliana) protein serinethreonine kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0341011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17794.1.S1_at--496--8011Chr03:1439084..1439108 (25 bp)
GGAGGTAGTAGACCCCAAGCTGCCC
LOC_Os03g03410
Os.17794.1.S1_at--421--1891Chr03:1439129..1439153 (25 bp)
ACTGAAACGGGCACTTCTGGTCGCC
LOC_Os03g03410
Os.17794.1.S1_at--781--7991Chr03:1439222..1439244 (23 bp)
GGATGATCTACTATGCCGCGATGAT
LOC_Os03g03410
Os.17794.1.S1_at--28--2791Chr03:1439351..1439375 (25 bp)
AAGAGATGCGCCTCAGACATCGGAC
LOC_Os03g03410
Os.17794.1.S1_at--520--5671Chr03:1439366..1439390 (25 bp)
GACATCGGACAGACACAGCTCAAGG
LOC_Os03g03410
Os.17794.1.S1_at--38--7851Chr03:1439425..1439449 (25 bp)
GGTACAGATGACAACAGCCCAGCAC
LOC_Os03g03410
Os.17794.1.S1_at--10--2171Chr03:1439438..1439462 (25 bp)
ACAGCCCAGCACTACAGTTGAACAT
LOC_Os03g03410
Os.17794.1.S1_at--523--9511Chr03:1439531..1439555 (25 bp)
TCTCGTTGGATCTCATAACCAGCTC
LOC_Os03g03410
Os.17794.1.S1_at--14--6891Chr03:1439573..1439597 (25 bp)
GTATTATACTCGAGCATCATTCTAT
LOC_Os03g03410
Os.17794.1.S1_at--480--5731Chr03:1439642..1439666 (25 bp)
GACTGAGACTGACTATGCCCCAGCT
LOC_Os03g03410
Os.17794.1.S1_at--118--611Chr03:1439656..1439680 (25 bp)
ATGCCCCAGCTAATGCTTACAGTGT
LOC_Os03g03410
Target Sequence 
GGAGGTAGTAGACCCCAAGCTGCCCGAGAAGCCTTCTCCCNAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCG
TCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT
GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGA
GAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGATTGCCAAT
ATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTAT
TATACTCGAGCATCATTCTATGACACTTGACACTTATAAACTACACAAGTGTAGGGTGGTGTTGNGACTGAGACTGACTA
TGCCCCAGCTAATGCTTACAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis