Browse Element(s) Details


Os.47345.1.S1_at

Description gb:AK070284.1
DB_XREF= gi:32980308
TID=Os.47345.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048L01, full insert sequence.
FL= gb:AK070284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0335011/11polygalacturonase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47345.1.S1_at--2--1031Chr03:1411641..1411665 (25 bp)
AGGTCACCGGCATCAACTACAGCGA
LOC_Os03g03350
Os.47345.1.S1_at--598--1891Chr03:1411665..1411689 (25 bp)
ACGTGTTCGCGGAGAACGTCACCAT
LOC_Os03g03350
Os.47345.1.S1_at--44--9871Chr03:1411724..1411748 (25 bp)
TACACTGGCATCTGCATGTCCAACG
LOC_Os03g03350
Os.47345.1.S1_at--2--1611Chr03:1411779..1411803 (25 bp)
AGCTGCAATGGAACTGCACCGATGT
LOC_Os03g03350
Os.47345.1.S1_at--499--3851Chr03:1411792..1411816 (25 bp)
CTGCACCGATGTCAAGGGTGTCGCC
LOC_Os03g03350
Os.47345.1.S1_at--1082--591Chr03:1411867..1411891 (25 bp)
ATGCGCCTTCCCTGAAGAAGAGCTC
LOC_Os03g03350
Os.47345.1.S1_at--568--2731Chr03:1411881..1411905 (25 bp)
AAGAAGAGCTCGTCATCGGTCCGCC
LOC_Os03g03350
Os.47345.1.S1_at--1070--7791Chr03:1411898..1411922 (25 bp)
GGTCCGCCTGAATTGCCAACGTGTA
LOC_Os03g03350
Os.47345.1.S1_at--599--5191Chr03:1411907..1411931 (25 bp)
GAATTGCCAACGTGTAGCTACTGAA
LOC_Os03g03350
Os.47345.1.S1_at--7--2971Chr03:1411964..1411988 (25 bp)
AATGGCCTGGGCTATGAGATGCTTG
LOC_Os03g03350
Os.47345.1.S1_at--465--7591Chr03:1411972..1411996 (25 bp)
GGGCTATGAGATGCTTGGGACCAAA
LOC_Os03g03350
Target Sequence 
AGGTCACCGGCATCAACTACAGCGACGTGTTCGCGGAGAACGTCACCATGGCCNGGNAGGATGGAGGGGATTCCCAACGA
CCCCTACACTGGCATCTGCATGTCCAACGTCACCGCGCAGCTCGCGCCGGACGCCAAGAAGCTGCAATGGAACTGCACCG
ATGTCAAGGGTGTCGCCTCCGACGTCTCGCCGGTGCCGTGCCCGGAGCTCGGGGCGGCGGGCAAGCCATGCGCCTTCCCT
GAAGAAGAGCTCGTCATCGGTCCGCCTGAATTGCCAACGTGTAGCTACTGAAATACTGATATAGGATGATAGTATGGTGT
GGGTAATGGCCTGGGCTATGAGATGCTTGGGACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis