Browse Element(s) Details


OsAffx.12718.1.S1_at

Description tigr:9631.m00241
TID=OsAffx.12718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0330010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03250NANA3+1364157..1370263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03260Os.50442.1.S1_at11/113+1372774..1378483Associated with HOX family protein, expressed
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12718.1.S1_at--870--9791Chr03:1395055..1395079 (25 bp)
TAAGCTAAGAGCAACCAAGGGTAAA
LOC_Os03g03300
OsAffx.12718.1.S1_at--544--2871NONE
AAGGGTAAACGGACGCTTGTCATGC
NONE
OsAffx.12718.1.S1_at--880--2571Chr03:1394362..1394383 (22 bp)
AACGGACGCTTGTCATGCAGCTGGG
LOC_Os03g03300
OsAffx.12718.1.S1_at--512--3611Chr03:1394329..1394353 (25 bp)
CTTGGATATCAAGGGCAATAATTAA
LOC_Os03g03300
OsAffx.12718.1.S1_at--251--10431Chr03:1394308..1394332 (25 bp)
TTAAAATACAGTTCAAGGATCAAGA
LOC_Os03g03300
OsAffx.12718.1.S1_at--293--371Chr03:1394290..1394314 (25 bp)
ATCAAGAACCTGGTCCTGGCAAAAC
LOC_Os03g03300
OsAffx.12718.1.S1_at--783--3891Chr03:1394281..1394305 (25 bp)
CTGGTCCTGGCAAAACAAGTTCTGA
LOC_Os03g03300
OsAffx.12718.1.S1_at--37--8231Chr03:1394273..1394297 (25 bp)
GGCAAAACAAGTTCTGAGACCCTTA
LOC_Os03g03300
OsAffx.12718.1.S1_at--736--6711Chr03:1394263..1394287 (25 bp)
GTTCTGAGACCCTTAAACATGGGAC
LOC_Os03g03300
OsAffx.12718.1.S1_at--819--2491Chr03:1394248..1394272 (25 bp)
AACATGGGACAATTGTCTCTGTAAA
LOC_Os03g03300
OsAffx.12718.1.S1_at--710--3171Chr03:1394238..1394262 (25 bp)
AATTGTCTCTGTAAACAATCAACAG
LOC_Os03g03300
Target Sequence 
TAAGCTAAGAGCAACCAAGGGTAAACGGACGCTTGTCATGCAGCTGGGGAAGCAGGCTTGGATATCAAGGGCAATAATTA
AAATACAGTTCAAGGATCAAGAACCTGGTCCTGGCAAAACAAGTTCTGAGACCCTTAAACATGGGACAATTGTCTCTGTA
AACAATCAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis