Browse Element(s) Details


Os.2243.2.S1_at

Description gb:AK070779.1
DB_XREF= gi:32980802
TID=Os.2243.2
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.2243 (NCBI UniGene Cluster)
UG_TITLE=Clone LS101 50S ribosomal protein L5 (rpl5) mRNA, nuclear gene encoding chloroplast protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072F09, full insert sequence.
FL= gb:AK098999.1 gb:AK059557.1 gb:AK104137.1 gb:AK070779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0336011/1150S ribosomal protein L5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2243.2.S1_at--409--5331Chr03:1413033..1413057 (25 bp)
GAAGTCCGTCGCCAGTTTCAAGATC
LOC_Os03g03360
Os.2243.2.S1_at--117--2471Chr03:1412999..1413023 (25 bp)
AACACCATTGGTATTGCCGTTACGC
LOC_Os03g03360
Os.2243.2.S1_at--1154--1831Chr03:1412587..1413002 (25 bp)
ACGCTCCGCGGCAGGGTAATGTTCA
LOC_Os03g03360
Os.2243.2.S1_at--199--7071Chr03:1412572..1412596 (25 bp)
GTAATGTTCAACTTCCTGGATAGGC
LOC_Os03g03360
Os.2243.2.S1_at--359--7951Chr03:1412555..1412579 (25 bp)
GGATAGGCTCATCAACCTTGGGCTT
LOC_Os03g03360
Os.2243.2.S1_at--490--10831Chr03:1412538..1412562 (25 bp)
TTGGGCTTCCTAGGACCATGGACTT
LOC_Os03g03360
Os.2243.2.S1_at--990--271Chr03:1412467..1412491 (25 bp)
ATAGGCCTTCGTGATCAGGGCGTGT
LOC_Os03g03360
Os.2243.2.S1_at--296--5951Chr03:1412320..1412344 (25 bp)
GAGCACATCAAGTCCTCCGTGGTGA
LOC_Os03g03360
Os.2243.2.S1_at--130--7751Chr03:1412241..1412265 (25 bp)
GGTGATTGCAAACCGCTGCCTAGGC
LOC_Os03g03360
Os.2243.2.S1_at--624--10091Chr03:1412221..1412245 (25 bp)
TAGGCACGTTGAGCTTTGCTTCTCA
LOC_Os03g03360
Os.2243.2.S1_at--371--6551Chr03:1412148..1412172 (25 bp)
GATTTTGTTATCTTGTCACGTGCTG
LOC_Os03g03360
Target Sequence 
GAAGTCCGTCGCCAGTTTCAAGATCCGCGAGGGGAACACCATTGGTATTGCCGTTACGCTCCGCGGCAGGGTAATGTTCA
ACTTCCTGGATAGGCTCATCAACCTTGGGCTTCCTAGGACCATGGACTTCCTTGGTGTCAACCCCAACAGCTTTGATGGC
CATGGCAACTTCACCATAGGCCTTCGTGATCAGGGCGTGTTCCCGGAGATCCCGTACGAGGTCGGTGGGAAGAAGAATGG
AATGGACGTCTGCATCGTCACCACCGCGAAGACCGACAACGAGGCTCTCAGGCTGCTCACCCTCCTTGGCATGCCGTTCG
CGGAGCACATCAAGTCCTCCGTGGTGATCCGGAAGAAGAGGTTGAAGCGCCACCACTTCATGAGCAAGGGCAGGGGAAGA
CGGTGATTGCAAACCGCTGCCTAGGCACGTTGAGCTTTGCTTCTCACTTTGTCAATTGTCATTGTTTTTGCAAAGTTTCG
TTTAGAAGTTTGATGATTTTGTTATCTTGTCACGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2243.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis