Browse Element(s) Details


Os.7539.1.S1_at

Description gb:AK119960.1
DB_XREF= gi:37989583
TID=Os.7539.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D03, full insert sequence.
FL= gb:AK119960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0332010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03260Os.50442.1.S1_at11/113+1372774..1378483Associated with HOX family protein, expressed
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7539.1.S1_at--464--7131Chr03:1398723..1398747 (25 bp)
GTCATCGCCGTGGAAGATACTGCTC
LOC_Os03g03320
Os.7539.1.S1_at--1151--1511Chr03:1398871..1398895 (25 bp)
AGCATCGACTGGTGCCACGGCATTG
LOC_Os03g03320
Os.7539.1.S1_at--9--1012Chr03:1399087..1399111 (25 bp)
AGGATTCACAATCTGCAAGAGCATG
LOC_Os03g03320
Os.7539.1.S1_at--791--5931Chr03:1399105..1399129 (25 bp)
GAGCATGAGCTGATCTTGTGGCCTC
LOC_Os03g03320
Os.7539.1.S1_at--794--10831Chr03:1399120..1399144 (25 bp)
TTGTGGCCTCTCAACTCAAGATCCT
LOC_Os03g03320
Os.7539.1.S1_at--724--10291Chr03:1399152..1399176 (25 bp)
TTTCCACCATTATTTTTGTTGTACA
LOC_Os03g03320
Os.7539.1.S1_at--611--3831Chr03:1399214..1399238 (25 bp)
CTGCATGAGGAGTACGTTTAACGGT
LOC_Os03g03320
Os.7539.1.S1_at--1149--2371Chr03:1399242..1399266 (25 bp)
AAACAGCTCGTTTAGGGTGTAATAG
LOC_Os03g03320
Os.7539.1.S1_at--499--7751Chr03:1399257..1399281 (25 bp)
GGTGTAATAGATGGCTCCCTTTCTT
LOC_Os03g03320
Os.7539.1.S1_at--937--9291Chr03:1399272..1399296 (25 bp)
TCCCTTTCTTGTCTTTCTCGTTTGT
LOC_Os03g03320
Os.7539.1.S1_at--194--9511Chr03:1399287..1399311 (25 bp)
TCTCGTTTGTCTTTGGCCATGTGAA
NONE
Target Sequence 
GTCATCGCCGTGGAAGATACTGCTCAGGTACCTGNGGNTCCTCATGCCGCTCTACCGGANGGTCAGGGCGCTGCCGNCNC
TGCGTGCTCCNANGANGAGGGTCTCNCCGGCGAGCCCCGCGAGCGCGAGAGNAAGGGCGTCCACGTCCAGCATCGACTGG
TGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGG
AACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTNGTTTTTTCCACCAT
TATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGT
AAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTTTCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis