Browse Element(s) Details


Os.50442.1.S1_at

Description gb:AK121207.1
DB_XREF= gi:37990830
TID=Os.50442.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088C15, full insert sequence.
FL= gb:AK121207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0326011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03220Os.46995.1.S1_x_at1/113+1347247..1350160retrotransposon protein, putative, unclassified
LOC_Os03g03230NANA3+1350524..1352245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03240NANA3+1360916..1363841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03250NANA3+1364157..1370263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03260Os.50442.1.S1_at11/113+1372774..1378483Associated with HOX family protein, expressed
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50442.1.S1_at--231--4591Chr03:1377986..1378010 (25 bp)
GCGCAAGAGCGGTACCGGAGCCTAA
LOC_Os03g03260
Os.50442.1.S1_at--559--4551Chr03:1378032..1378056 (25 bp)
GCGACTTGGCCGGATGATCCATGCG
LOC_Os03g03260
Os.50442.1.S1_at--914--611Chr03:1378052..1378076 (25 bp)
ATGCGGCGAACTACTCAGTTCATCG
LOC_Os03g03260
Os.50442.1.S1_at--728--9631Chr03:1378066..1378090 (25 bp)
TCAGTTCATCGCACGTACGCATATA
LOC_Os03g03260
Os.50442.1.S1_at--1162--10111Chr03:1378091..1378115 (25 bp)
TATGCATTCCGTGTACTGTACTAGC
LOC_Os03g03260
Os.50442.1.S1_at--241--1891Chr03:1378118..1378142 (25 bp)
ACGATTTGGATGTCGCAGCGGCAGC
LOC_Os03g03260
Os.50442.1.S1_at--113--7231Chr03:1378238..1378262 (25 bp)
GTGGTCCTTGATTTTACCGACCTAT
LOC_Os03g03260
Os.50442.1.S1_at--766--6711Chr03:1378270..1378294 (25 bp)
GTTCGTATATATCTCTCGCGATCGA
LOC_Os03g03260
Os.50442.1.S1_at--182--9351Chr03:1378285..1378309 (25 bp)
TCGCGATCGATCGTACACCAGCAGG
LOC_Os03g03260
Os.50442.1.S1_at--779--1171Chr03:1378312..1378336 (25 bp)
AGTAGCCCAGTAGATCGTCGTCGAT
LOC_Os03g03260
Os.50442.1.S1_at--1016--4651Chr03:1378359..1378383 (25 bp)
GCGGGCAGTTTATTTTAGCCTACCG
LOC_Os03g03260
Target Sequence 
GCGCAAGAGCGGTACCGGAGCCTAAGCGCCGGCTTCCACCTGCTCCGCGACTTGGCCGGATGATCCATGCGGCGAACTAC
TCAGTTCATCGCACGTACGCATATATATGCATTCCGTGTACTGTACTAGCAGACGATTTGGATGTCGCAGCGGCAGCGGC
CGCGGCGGTGGCGACTAGGTAGGGATCCTCGCGCGCGGCCGGCGCTGCGGCGTGCATTGGTTGGGCAACCGAATTAAGCG
TTTTTGTTGGTGGTGGTCCTTGATTTTACCGACCTATAGGTACAGTTCGTATATATCTCTCGCGATCGATCGTACACCAG
CAGGGGAGTAGCCCAGTAGATCGTCGTCGATGGCGCTTTCGTGTGGTTCGGAAGCGGGCAGTTTATTTTAGCCTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis