Browse Element(s) Details


Os.54885.1.S1_at

Description gb:AK107007.1
DB_XREF= gi:32992216
TID=Os.54885.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E03, full insert sequence.
FL= gb:AK107007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0327011/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03240NANA3+1360916..1363841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03250NANA3+1364157..1370263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03260Os.50442.1.S1_at11/113+1372774..1378483Associated with HOX family protein, expressed
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54885.1.S1_at--120--1951Chr03:1383003..1383027 (25 bp)
ACGGCGGATCGCTCGGTTACTGCTT
LOC_Os03g03270
Os.54885.1.S1_at--757--10471Chr03:1383019..1383043 (25 bp)
TTACTGCTTGCTTCGGCTAATGATA
LOC_Os03g03270
Os.54885.1.S1_at--720--6471Chr03:1383091..1383115 (25 bp)
GATACAACACTGTGCCGGCGAGAAT
LOC_Os03g03270
Os.54885.1.S1_at--100--8471Chr03:1383117..1383141 (25 bp)
TGGCGCACTTGTGGGCGTTGTACAA
LOC_Os03g03270
Os.54885.1.S1_at--872--2831Chr03:1383140..1383164 (25 bp)
AAGTACGGGCAGTGCTGCTGCGAAC
LOC_Os03g03270
Os.54885.1.S1_at--510--4111Chr03:1383160..1383184 (25 bp)
CGAACGGCGACAGGCTTGTTTGTTT
LOC_Os03g03270
Os.54885.1.S1_at--753--3611Chr03:1383174..1383198 (25 bp)
CTTGTTTGTTTGTGAGCCCGTCGAC
LOC_Os03g03270
Os.54885.1.S1_at--992--7191Chr03:1383193..1383217 (25 bp)
GTCGACTGTCGAGGTGTTCAAATAA
LOC_Os03g03270
Os.54885.1.S1_at--624--2771Chr03:1383233..1383257 (25 bp)
AAGACCAGAGGCTACGAGTGTTCAA
LOC_Os03g03270
Os.54885.1.S1_at--1155--6111Chr03:1383248..1383272 (25 bp)
GAGTGTTCAAATAGCCCATGGGCAA
LOC_Os03g03270
Os.54885.1.S1_at--138--9631Chr03:1383295..1383319 (25 bp)
TCATGGGCCATGTATCAACTAACTG
LOC_Os03g03270
Target Sequence 
ACGGCGGATCGCTCGGTTACTGCTTGCTTCGGCTAATGATAGCTGTAACCTTAGATAATAGGTGTATGTAAGTAACCGAA
CTCACCTTGATACAACACTGTGCCGGCGAGAATGTGGCGCACTTGTGGGCGTTGTACAAGTACGGGCAGTGCTGCTGCGA
ACGGCGACAGGCTTGTTTGTTTGTGAGCCCGTCGACTGTCGAGGTGTTCAAATAATCTGGCAAACAGGTGAAGACCAGAG
GCTACGAGTGTTCAAATAGCCCATGGGCAATTTTCAAAAAAAAAAAGAAAGCTCATGGGCCATGTATCAACTAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis