Browse Element(s) Details


Os.6143.1.S1_s_at

Description gb:AK069148.1
DB_XREF= gi:32979172
TID=Os.6143.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003G19, full insert sequence.
FL= gb:AK069148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0329011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03240NANA3+1360916..1363841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03250NANA3+1364157..1370263retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03260Os.50442.1.S1_at11/113+1372774..1378483Associated with HOX family protein, expressed
LOC_Os03g03270Os.54885.1.S1_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03270OsAffx.24949.1.S1_x_at11/113+1381173..1383341fringe protein, putative, expressed
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6143.1.S1_s_at--391--8671Chr03:1389652..1389676 (25 bp)
TGTGTGGTTTCATTTTTGCGGGATT
LOC_Os03g03290
Os.6143.1.S1_s_at--1069--7471Chr03:1389653..1389677 (25 bp)
GTGTGGTTTCATTTTTGCGGGATTG
LOC_Os03g03290
Os.6143.1.S1_s_at--720--7491Chr03:1389655..1389679 (25 bp)
GTGGTTTCATTTTTGCGGGATTGTT
LOC_Os03g03290
Os.6143.1.S1_s_at--912--7851Chr03:1389657..1389681 (25 bp)
GGTTTCATTTTTGCGGGATTGTTGT
LOC_Os03g03290
Os.6143.1.S1_s_at--99--3591Chr03:1389662..1389686 (25 bp)
CATTTTTGCGGGATTGTTGTTGGTT
LOC_Os03g03290
Os.6143.1.S1_s_at--564--10391Chr03:1389665..1389689 (25 bp)
TTTTGCGGGATTGTTGTTGGTTTTG
LOC_Os03g03290
Os.6143.1.S1_s_at--781--9091Chr03:1389668..1389692 (25 bp)
TGCGGGATTGTTGTTGGTTTTGTTA
LOC_Os03g03290
Os.6143.1.S1_s_at--501--6591Chr03:1389673..1389697 (25 bp)
GATTGTTGTTGGTTTTGTTAATGCT
LOC_Os03g03290
Os.6143.1.S1_s_at--1119--10771Chr03:1389678..1389702 (25 bp)
TTGTTGGTTTTGTTAATGCTTGTGG
LOC_Os03g03290
Os.6143.1.S1_s_at--927--6171Chr03:1389722..1389746 (25 bp)
GAGGAATAATGGTACAACTTGGTCT
LOC_Os03g03290
Os.6143.1.S1_s_at--1002--351Chr03:1389727..1389751 (25 bp)
ATAATGGTACAACTTGGTCTTGGCA
LOC_Os03g03290
Target Sequence 
TGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGGGAGGTTGAGGACTGAGCTGAGGAATAAT
GGTACAACTTGGTCTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6143.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis