Browse Element(s) Details


Os.14067.1.S1_at

Description gb:BI804847
DB_XREF= gi:15852051
DB_XREF=S001B02
CLONE=S001B02
TID=Os.14067.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14067 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g033508/11polygalacturonase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03280Os.54207.1.S1_at11/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03280OsAffx.23251.1.S1_x_at1/113+1384410..1387148Protein kinase domain containing protein, expressed
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14067.1.S1_at--145--571Chr03:1409408..1409432 (25 bp)
ATCCTCGCGTCTCAGGTGATCTGAG
LOC_Os03g03350
Os.14067.1.S1_at--1010--7391Chr03:1409423..1409447 (25 bp)
GTGATCTGAGCCACCAACAACATCG
LOC_Os03g03350
Os.14067.1.S1_at--275--2471Chr03:1409438..1409462 (25 bp)
AACAACATCGGTTGCATGCATCAAC
LOC_Os03g03350
Os.14067.1.S1_at--568--4291NONE
CCTCTCTTATTACCACTTTACCATG
NONE
Os.14067.1.S1_at--730--3311Chr03:1409480..1409501 (22 bp)
CACTTTACCATGATTAACTGCGCCA
LOC_Os03g03350
Os.14067.1.S1_at--1050--131Chr03:1409489..1409513 (25 bp)
ATTAACTGCGCCATTATCTCTATCT
LOC_Os03g03350
Os.14067.1.S1_at--234--9551Chr03:1409507..1409531 (25 bp)
TCTATCTCTATCTCGGCTGGTGTTT
LOC_Os03g03350
Os.14067.1.S1_at--979--6831Chr03:1409528..1409552 (25 bp)
GTTTCGCCGCGAAAGTAGCGCATGT
LOC_Os03g03350
Os.14067.1.S1_at--117--6971Chr03:1409542..1409565 (24 bp)
GTAGCGCATGTTAAATGTCCGGTTA
LOC_Os03g03350
Os.14067.1.S1_at--836--751NONE
ATGTCCGGTTAATTAGAGCAAGCTT
NONE
Os.14067.1.S1_at--565--5171NONE
GCAAGCTTAATTGTGTAGCCTACTA
NONE
Target Sequence 
ATCCTCGCGTCTCAGGTGATCTGAGCCACCAACAACATCGGTTGCATGCATCAACCCCCTCTCTTATTACCACTTTACCA
TGATTAACTGCGCCATTATCTCTATCTCTATCTCGGCTGGTGTTTCGCCGCGAAAGTAGCGCATGTTAAATGTCCGGTTA
ATTAGAGCAAGCTTAATTGTGTAGCCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis