Browse Element(s) Details


Os.26406.1.S1_at

Description gb:AK121680.1
DB_XREF= gi:37991303
TID=Os.26406.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23268 putative phosphoribosylanthranilate transferase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069P19, full insert sequence.
FL= gb:AK121680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0345011/11Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004048molecular_functionanthranilate phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26406.1.S1_at--353--10811Chr03:1464726..1464750 (25 bp)
TTGGTTGGCCAACAGAATTCCTCGA
LOC_Os03g03450
Os.26406.1.S1_at--15--3171Chr03:1464711..1464735 (25 bp)
AATTCCTCGATAAGATCCTCACCAA
LOC_Os03g03450
Os.26406.1.S1_at--390--7671Chr03:1464676..1464700 (25 bp)
GGGATTCTTCAATAAGACCTGAGGA
LOC_Os03g03450
Os.26406.1.S1_at--501--10351Chr03:1464630..1464654 (25 bp)
TTTAGGTTATCTTTGTCCATAGTGA
LOC_Os03g03450
Os.26406.1.S1_at--997--10031Chr03:1464498..1464522 (25 bp)
TAGAGATCTTGGTAGTGCCCGTTAC
LOC_Os03g03450
Os.26406.1.S1_at--1026--6931Chr03:1464487..1464511 (25 bp)
GTAGTGCCCGTTACATTATGTGCTA
LOC_Os03g03450
Os.26406.1.S1_at--605--10431Chr03:1464472..1464496 (25 bp)
TTATGTGCTAGTGCAAGGCGTGGAA
LOC_Os03g03450
Os.26406.1.S1_at--364--8151Chr03:1464447..1464471 (25 bp)
GGAAAACGGAGCTATACAGTATATC
LOC_Os03g03450
Os.26406.1.S1_at--224--3451Chr03:1464431..1464455 (25 bp)
CAGTATATCTGTTCAATGTTGCATC
LOC_Os03g03450
Os.26406.1.S1_at--209--2091Chr03:1464377..1464401 (25 bp)
ACATATGATTCATCTCGACTGCCTC
LOC_Os03g03450
Os.26406.1.S1_at--183--5731Chr03:1464361..1464385 (25 bp)
GACTGCCTCCCATTATAAACTGAAC
LOC_Os03g03450
Target Sequence 
TTGGTTGGCCAACAGAATTCCTCGATAAGATCCTCACCAAAGAAAAAAAAGGGATTCTTCAATAAGACCTGAGGAATGAT
GGCAAATAAGGATTATTTTAGGTTATCTTTGTCCATAGTGANNTATTTNTGTATGTTCGTTCCAAGTGCCATCTGGGGTG
AGATTATAAGGTTATGGTTGGGATTGTAGCNTTCTTTTCTAGTCTATTTAGAGATAGATGACTCTTGTTTAGAGATCTTG
GTAGTGCCCGTTACATTATGTGCTAGTGCAAGGCGTGGAAGGAAAACGGAGCTATACAGTATATCTGTTCAATGTTGCAT
CTCAATTTTGTAAAATGCTTCAGAAACAATACATATGATTCATCTCGACTGCCTCCCATTATAAACTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis