Browse Element(s) Details


Os.33603.1.S1_at

Description gb:AK099929.1
DB_XREF= gi:32985138
TID=Os.33603.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1015F07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118L13, full insert sequence.
FL= gb:AK099929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0350011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046916biological_processtransition metal ion homeostasis
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33603.1.S1_at--55--10511Chr03:1490603..1490627 (25 bp)
TTCAACGCCGGGTACATGAACCAGT
LOC_Os03g03500
Os.33603.1.S1_at--794--4171Chr03:1490670..1490694 (25 bp)
CGCCACAGTACTACTACGCGAGGGA
LOC_Os03g03500
Os.33603.1.S1_at--59--2031Chr03:1490682..1490706 (25 bp)
ACTACGCGAGGGACATGAGCATGGA
LOC_Os03g03500
Os.33603.1.S1_at--433--4751Chr03:1490733..1490757 (25 bp)
GCTGATCGAATGGTATTCTTGCATT
LOC_Os03g03500
Os.33603.1.S1_at--239--9591Chr03:1490749..1490773 (25 bp)
TCTTGCATTGCATCTGATCTGTAGC
LOC_Os03g03500
Os.33603.1.S1_at--705--4971Chr03:1490758..1490782 (25 bp)
GCATCTGATCTGTAGCAACTAGCAA
LOC_Os03g03500
Os.33603.1.S1_at--1159--1471Chr03:1490771..1490795 (25 bp)
AGCAACTAGCAAGTAGCCCTACGTA
LOC_Os03g03500
Os.33603.1.S1_at--231--4551Chr03:1490786..1490810 (25 bp)
GCCCTACGTACATTTTCTCGAACAT
LOC_Os03g03500
Os.33603.1.S1_at--482--5971Chr03:1490848..1490872 (25 bp)
GAGAACCGATGTGTATACTGCATAG
LOC_Os03g03500
Os.33603.1.S1_at--834--9911Chr03:1490863..1490887 (25 bp)
TACTGCATAGTAGTGTATCTCGTGT
LOC_Os03g03500
Os.33603.1.S1_at--30--10071Chr03:1490873..1490897 (25 bp)
TAGTGTATCTCGTGTTTGAATTGGA
LOC_Os03g03500
Target Sequence 
TTCAACGCCGGGTACATGAACCAGTACCGGCCGCCGCCGCCGCCGCCGCCGGCCTACCCGTACGCGCCGCCACAGTACTA
CTACGCGAGGGACATGAGCATGGAGGAGAACCCCAACCCGTGTGCCATTTGCTGATCGAATGGTATTCTTGCATTGCATC
TGATCTGTAGCAACTAGCAAGTAGCCCTACGTACATTTTCTCGAACATGATGTGTATACTGTTTTTTTTTTTTTTTTTTT
TTTGAGAACCGATGTGTATACTGCATAGTAGTGTATCTCGTGTTTGAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis