Browse Element(s) Details


OsAffx.3123.1.S1_at

Description tigr:9631.m00259
TID=OsAffx.3123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0348011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3123.1.S1_at--707--5771Chr03:1484210..1484234 (25 bp)
GACGATGACGTCAAGTGCTACCGCG
LOC_Os03g03480
OsAffx.3123.1.S1_at--137--1871Chr03:1484173..1484197 (25 bp)
ACGACGAGGGTGACCGTGCCCACGC
LOC_Os03g03480
OsAffx.3123.1.S1_at--430--4511Chr03:1484144..1484168 (25 bp)
GCCGAACACCGTGCACGACGCGGAT
LOC_Os03g03480
OsAffx.3123.1.S1_at--117--4571Chr03:1484061..1484085 (25 bp)
GCGCGCTGGGCGTCCGGGAAGACCG
LOC_Os03g03480
OsAffx.3123.1.S1_at--999--5351Chr03:1484044..1484068 (25 bp)
GAAGACCGCGGGATCAGGCCGGCGA
LOC_Os03g03480
OsAffx.3123.1.S1_at--47--976Chr09:19234086..19234116 (25 bp)
AGGAGCGCGAGCGATGCATCGTCAG
NONE
OsAffx.3123.1.S1_at--825--6331Chr03:1483984..1484008 (25 bp)
GATGCATCGTCAGGCGGCAGGCGGC
LOC_Os03g03480
OsAffx.3123.1.S1_at--758--7371Chr03:1483924..1483948 (25 bp)
GTGACGGAGTCGGACGACCCGCTGG
LOC_Os03g03480
OsAffx.3123.1.S1_at--1102--4551Chr03:1483773..1483797 (25 bp)
GCGCCTTCGCCGACGTCTGTGAGGA
LOC_Os03g03480
OsAffx.3123.1.S1_at--111--10651Chr03:1483768..1483792 (25 bp)
TTCGCCGACGTCTGTGAGGAGCTCT
LOC_Os03g03480
OsAffx.3123.1.S1_at--614--4091Chr03:1483763..1483787 (25 bp)
CGACGTCTGTGAGGAGCTCTTCGCC
LOC_Os03g03480
Target Sequence 
GACGATGACGTCAAGTGCTACCGCGACGTCGGCGAAGACGACGAGGGTGACCGTGCCCACGCCCGCGCCGAACACCGTGC
ACGACGCGGATGGCACGCCGAGCGTGGGCACGCTCCTGCTGCAGCTGCGCGAGCTGGAGCGCGGCGTGCGCGCGCTGGGC
GTCCGGGAAGACCGCGGGATCAGGCCGGCGACGCCGCCGCCGCCGCGGCACAGGAGGAGCGCGAGCGATGCATCGTCAGG
CGGCAGGCGGCGGCGCGGGCGGCTGGAGGAGGAGAGCGTGCCGGTGGTGACGGAGTCGGACGACCCGCTGGGCGACTTCC
GGCGGTCGATGGCGCAGATGATCGTGGAGAACGAGATCACGGCCACCCCCGAGCTGCGGGAGCTGCTGCATCGCTTCCTC
TCGCTCAACTCGTCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGACGTCTGTGAGGAGCTCTTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis