Browse Element(s) Details


OsAffx.12722.1.S1_at

Description tigr:9631.m00263
TID=OsAffx.12722.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0352010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12722.1.S1_at--158--3651NONE
CTTCGCCTCCGTACAAATACTGATG
NONE
OsAffx.12722.1.S1_at--1100--7411Chr03:1499840..1499864 (25 bp)
GTGTTCGCATCACATTATTCTGGCT
LOC_Os03g03520
OsAffx.12722.1.S1_at--806--10411Chr03:1499826..1499850 (25 bp)
TTATTCTGGCTAAGCTTTCTTCCTC
LOC_Os03g03520
OsAffx.12722.1.S1_at--324--5071Chr03:1499765..1499789 (25 bp)
GCAGCGGGCCAGATTCTACACGAAT
LOC_Os03g03520
OsAffx.12722.1.S1_at--524--5211Chr03:1499744..1499768 (25 bp)
GAATTCTGCACGCTAGTTGCATGCA
LOC_Os03g03520
OsAffx.12722.1.S1_at--630--6671Chr03:1499729..1499753 (25 bp)
GTTGCATGCAAAAGCCGCCTTGCGA
LOC_Os03g03520
OsAffx.12722.1.S1_at--885--10511Chr03:1499710..1499734 (25 bp)
TTGCGAGTTGCGAGTTCCGACGTAC
LOC_Os03g03520
OsAffx.12722.1.S1_at--802--9931Chr03:1499688..1499712 (25 bp)
TACGGTTACCTCTGGGCACCAAACG
LOC_Os03g03520
OsAffx.12722.1.S1_at--695--2651Chr03:1499652..1499676 (25 bp)
AAGCCGTTGCTGTGTTTCGAGTTCC
LOC_Os03g03520
OsAffx.12722.1.S1_at--845--7331Chr03:1499603..1499627 (25 bp)
GTGCACTCACACTCACGATAGCTGT
LOC_Os03g03520
OsAffx.12722.1.S1_at--271--10531Chr03:1499573..1499597 (25 bp)
TTCAGCTCGATTATATCACGGGCGG
LOC_Os03g03520
Target Sequence 
CTTCGCCTCCGTACAAATACTGATGATGTGTGTTCGCATCACATTATTCTGGCTAAGCTTTCTTCCTCCTCTTTCTTGGG
ACGAGGACAGCGGCGGCAGCGTACGCAGCGGGCCAGATTCTACACGAATTCTGCACGCTAGTTGCATGCAAAAGCCGCCT
TGCGAGTTGCGAGTTCCGACGTACGGTTACCTCTGGGCACCAAACGGGAAACCGGCCAAGCCGTTGCTGTGTTTCGAGTT
CCGACGACGACGCCGCTGCGGCAGCGGTGCACTCACACTCACGATAGCTGTGGCAATTCAGCTCGATTATATCACGGGCG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis