Browse Element(s) Details


Os.9765.1.S1_a_at

Description gb:AY346336.1
DB_XREF= gi:33637780
GEN=RPE1
TID=Os.9765.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9765 (NCBI UniGene Cluster)
DEF=Oryza sativa RPE1 protein (RPE1) mRNA, complete cds.
PROD=RPE1 protein
FL= gb:AY346336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0347011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9765.1.S1_a_at--234--7611Chr03:1479951..1479975 (25 bp)
GGGAAGATCATACCTCAGCTACAAG
LOC_Os03g03470
Os.9765.1.S1_a_at--1103--10731Chr03:1479320..1479344 (25 bp)
TTGAAACCTGGTTGGAAATCGCGAA
LOC_Os03g03470
Os.9765.1.S1_a_at--500--5591Chr03:1479306..1479330 (25 bp)
GAAATCGCGAAAAAGCTAATGCCAG
LOC_Os03g03470
Os.9765.1.S1_a_at--798--4831Chr03:1479292..1479316 (25 bp)
GCTAATGCCAGATGGACGGATCATT
LOC_Os03g03470
Os.9765.1.S1_a_at--639--8531Chr03:1479280..1479304 (25 bp)
TGGACGGATCATTGTTAACTGTGGT
LOC_Os03g03470
Os.9765.1.S1_a_at--144--8791Chr03:1479268..1479292 (25 bp)
TGTTAACTGTGGTGGAGCTGATGCT
LOC_Os03g03470
Os.9765.1.S1_a_at--643--8851Chr03:1479250..1479274 (25 bp)
TGATGCTGCTGTATCTCTTGCTAAT
LOC_Os03g03470
Os.9765.1.S1_a_at--30--3771Chr03:1479236..1479260 (25 bp)
CTCTTGCTAATGATACGGGCCTTTC
LOC_Os03g03470
Os.9765.1.S1_a_at--434--2791Chr03:1479228..1479252 (25 bp)
AATGATACGGGCCTTTCGTCCTGGG
LOC_Os03g03470
Os.9765.1.S1_a_at--164--10631Chr03:1479214..1479238 (25 bp)
TTCGTCCTGGGTTCAGAATTCCACA
LOC_Os03g03470
Os.9765.1.S1_a_at--276--5211Chr03:1479199..1479223 (25 bp)
GAATTCCACAATTAAGGCACTCTGT
LOC_Os03g03470
Target Sequence 
GGGAAGATCATACCTCAGCTACAAGAAGTTGAAACCTGGTTGGAAATCGCGAAAAAGCTAATGCCAGATGGACGGATCAT
TGTTAACTGTGGTGGAGCTGATGCTGCTGTATCTCTTGCTAATGATACGGGCCTTTCGTCCTGGGTTCAGAATTCCACAA
TTAAGGCACTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9765.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis