Browse Element(s) Details


Os.56075.1.S1_at

Description gb:AK109217.1
DB_XREF= gi:32994426
TID=Os.56075.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E01, full insert sequence.
FL= gb:AK109217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g035209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56075.1.S1_at--809--5991Chr03:1501322..1501346 (25 bp)
GAGACGACCACCAGCTAGCTCGCAA
NONE
Os.56075.1.S1_at--1110--4851Chr03:1501309..1501333 (25 bp)
GCTAGCTCGCAATGGCGCAGCACGA
NONE
Os.56075.1.S1_at--240--4191Chr03:1500959..1500983 (25 bp)
CCCTTCGCTGCCGAGAGATGACTGG
LOC_Os03g03520
Os.56075.1.S1_at--293--6031Chr03:1500945..1500969 (25 bp)
GAGATGACTGGGTTGTCTTCGATCT
LOC_Os03g03520
Os.56075.1.S1_at--1113--10811Chr03:1500933..1500957 (25 bp)
TTGTCTTCGATCTGTCGTCCGTCCG
LOC_Os03g03520
Os.56075.1.S1_at--168--7231Chr03:1500917..1500941 (25 bp)
GTCCGTCCGTCGAGTGTACATTTTC
LOC_Os03g03520
Os.56075.1.S1_at--109--7031Chr03:1500902..1500926 (25 bp)
GTACATTTTCTTAGTCTTATTATTC
LOC_Os03g03520
Os.56075.1.S1_at--175--511Chr03:1500858..1500882 (25 bp)
ATCGTCGTTTTTCCTAAGATGATCG
LOC_Os03g03520
Os.56075.1.S1_at--449--5291Chr03:1500822..1500846 (25 bp)
GAATGGGATCCAAATTCTAAAGAAA
LOC_Os03g03520
Os.56075.1.S1_at--50--4291Chr03:1500779..1500803 (25 bp)
CCTGCAGATTTCAGATGCTTCGATT
LOC_Os03g03520
Os.56075.1.S1_at--433--431Chr03:1500753..1500777 (25 bp)
ATCTTGCAGATAAGTTTGGCACTTA
LOC_Os03g03520
Target Sequence 
GAGACGACCACCAGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGG
AGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGG
GCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTG
TGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCG
CCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGAT
CTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGNGNTCTTTCTTATCGTCGTTTTTCCTA
AGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACNAACCTGCAGATTTCAGATG
CTTCGATTGATCTTGCAGATAAGTTTGGCACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis