Browse Element(s) Details


Os.9765.2.S1_at

Description gb:AK100841.1
DB_XREF= gi:32986050
TID=Os.9765.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123F06, full insert sequence.
FL= gb:AK100841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0347010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9765.2.S1_at--769--10751Chr03:1478161..1478185 (25 bp)
TTGAGCAGAATCAATGCACCGGAGG
LOC_Os03g03470
Os.9765.2.S1_at--754--3011Chr03:1478149..1478173 (25 bp)
AATGCACCGGAGGAGTAACATGCCT
LOC_Os03g03470
Os.9765.2.S1_at--244--6071Chr03:1478137..1478161 (25 bp)
GAGTAACATGCCTCCATGCCGGTTG
LOC_Os03g03470
Os.9765.2.S1_at--902--591Chr03:1478122..1478146 (25 bp)
ATGCCGGTTGCGCTCTGCATACTTT
LOC_Os03g03470
Os.9765.2.S1_at--675--4811Chr03:1478111..1478135 (25 bp)
GCTCTGCATACTTTTTTCTGTTCTA
LOC_Os03g03470
Os.9765.2.S1_at--361--3871Chr03:1478094..1478118 (25 bp)
CTGTTCTAGATTGATTGTGACGATA
LOC_Os03g03470
Os.9765.2.S1_at--612--5771Chr03:1478076..1478100 (25 bp)
GACGATATATCACATGCCTGGTAAA
LOC_Os03g03470
Os.9765.2.S1_at--1108--6731Chr03:1478050..1478074 (25 bp)
GTTCAGGGTATTAAGCGCATGCACT
LOC_Os03g03470
Os.9765.2.S1_at--1112--9731Chr03:1478024..1478048 (25 bp)
TAATGAATGATGATGCTCGATGGCA
LOC_Os03g03470
Os.9765.2.S1_at--710--9091Chr03:1478011..1478035 (25 bp)
TGCTCGATGGCATGATCTTGTTGTG
LOC_Os03g03470
Os.9765.2.S1_at--179--9591Chr03:1477996..1478020 (25 bp)
TCTTGTTGTGCTAACTTGTTGGGTT
NONE
Target Sequence 
TTGAGCAGAATCAATGCACCGGAGGAGTAACATGCCTCCATGCCGGTTGCGCTCTGCATACTTTTTTCTGTTCTAGATTG
ATTGTGACGATATATCACATGCCTGGTAAATGTTCAGGGTATTAAGCGCATGCACTATAATGAATGATGATGCTCGATGG
CATGATCTTGTTGTGCTAACTTGTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9765.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis