Browse Element(s) Details


Os.40094.1.A1_at

Description gb:AK111921.1
DB_XREF= gi:37988584
TID=Os.40094.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.40094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A10, full insert sequence.
FL= gb:AK111921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0346010/11C-terminal binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009965biological_processleaf morphogenesis
GO:0042814biological_processmonopolar cell growth
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40094.1.A1_at--734--2291Chr03:1472823..1472847 (25 bp)
AAATGGACTGACTCGTTCTTGTTGC
LOC_Os03g03460
Os.40094.1.A1_at--920--5711Chr03:1472814..1472838 (25 bp)
GACTCGTTCTTGTTGCTTGGTTTGG
LOC_Os03g03460
Os.40094.1.A1_at--803--6852Chr11:16892859..16893226 (25 bp)
GTTTGTTGCCAACTCTCTTTTTCTG
NONE
Os.40094.1.A1_at--328--2511Chr03:1472780..1472804 (25 bp)
AACTCTCTTTTTCTGCCTAAAGTAT
LOC_Os03g03460
Os.40094.1.A1_at--988--10291Chr03:1472750..1472774 (25 bp)
TTTCGCTTTTGTAGTACAGGAACCT
LOC_Os03g03460
Os.40094.1.A1_at--446--7031Chr03:1472737..1472761 (25 bp)
GTACAGGAACCTTGTGGGCACAGAG
LOC_Os03g03460
Os.40094.1.A1_at--170--731Chr03:1472709..1472733 (25 bp)
ATGATTGTACGTGTTGTCTTGCTAA
LOC_Os03g03460
Os.40094.1.A1_at--803--10812Chr03:13518377..13518416 (24 bp)
TTGTCTTGCTAAACCTGACCTTCAA
NONE
Os.40094.1.A1_at--422--1771Chr03:1472684..1472708 (25 bp)
ACCTGACCTTCAACACTGTAGTAAG
LOC_Os03g03460
Os.40094.1.A1_at--107--10791Chr03:1472657..1472681 (25 bp)
TTGATTTTTATCCTTGCACGTTTGA
LOC_Os03g03460
Os.40094.1.A1_at--258--10371Chr03:1472653..1472677 (25 bp)
TTTTTATCCTTGCACGTTTGATGCT
NONE
Target Sequence 
AAATGGACTGACTCGTTCTTGTTGCTTGGTTTGGTTTGTTGCCAACTCTCTTTTTCTGCCTAAAGTATTCAATTTTCGCT
TTTGTAGTACAGGAACCTTGTGGGCACAGAGTGTATGATTGTACGTGTTGTCTTGCTAAACCTGACCTTCAACACTGTAG
TAAGTTTTGATTTTTATCCTTGCACGTTTGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40094.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis