Browse Element(s) Details


OsAffx.3122.1.S1_at

Description tigr:9631.m00252
TID=OsAffx.3122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g034205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3122.1.S1_at--801--3311Chr03:1445903..1445927 (25 bp)
CACATTCGATGAGTGCGAGAAGCTT
NONE
OsAffx.3122.1.S1_at--229--1451Chr03:1445886..1445910 (25 bp)
AGAAGCTTGTGGTGACTTTGTCATT
NONE
OsAffx.3122.1.S1_at--534--271NONE
ATATGTATGCATTTGTCCTCCACGA
NONE
OsAffx.3122.1.S1_at--831--211Chr03:1445272..1445292 (21 bp)
ATTTGTCCTCCACGAATCCATGGTC
NONE
OsAffx.3122.1.S1_at--296--9211Chr03:1445264..1445288 (25 bp)
TCCACGAATCCATGGTCGCTGGAAA
NONE
OsAffx.3122.1.S1_at--97--4111NONE
CGCAGCCCTTGGTCGAATGTCGTAC
NONE
OsAffx.3122.1.S1_at--1109--2911Chr03:1443612..1443635 (24 bp)
AAGGCCAGGCCGAACCACCAAACAT
LOC_Os03g03420
OsAffx.3122.1.S1_at--888--8391Chr03:1443605..1443629 (25 bp)
GGCCGAACCACCAAACATCCTGGTT
LOC_Os03g03420
OsAffx.3122.1.S1_at--963--8571Chr03:1443585..1443609 (25 bp)
TGGTTGCTTTCAGGCCTGTCCACTG
LOC_Os03g03420
OsAffx.3122.1.S1_at--527--3891Chr03:1443570..1443594 (25 bp)
CTGTCCACTGAACTATCTCCAGATT
LOC_Os03g03420
OsAffx.3122.1.S1_at--1026--5471Chr03:1443566..1443585 (20 bp)
GAACTATCTCCAGATTTCAGTGATA
LOC_Os03g03420
Target Sequence 
CACATTCGATGAGTGCGAGAAGCTTGTGGTGACTTTGTCATTATTAAGACATACTTTTAAAGGTGGTTATACGGATAGGG
TATGTATATATGTATGCATTTGTCCTCCACGAATCCATGGTCGCTGGAAAAGGGTGGAGAAACCAAGAGGGGGCGTCGCC
GGAGTCGGAGTCGGAGACGTCACGGCGAGCTCCGCGGCGGCGATGGAGAGCTCCCTGGGCGGCTGGCCGTCCTACAACCC
GCAAAACTTCAGCCAGGTCGTCCCCGCCGACCCCTCCGCGCAGCCCTTGGTCGAATGTCGTACCAGCCACTTACATTGCA
ACACACAGGACGGATCCACCTCCCGGTCAAGGCCAGGCCGAACCACCAAACATCCTGGTTGCTTTCAGGCCTGTCCACTG
AACTATCTCCAGATTTCAGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis