Browse Element(s) Details


Os.18178.1.S1_at

Description gb:C98212
DB_XREF= gi:3760958
DB_XREF=C98212
CLONE=C1153_6Z
TID=Os.18178.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative bZIP transcription factor (OJ1015F07.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g035507/11bZIP family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18178.1.S1_at--566--4831Chr03:1530880..1531036 (25 bp)
GCTCACGATGATGCAGCGCGACTCG
LOC_Os03g03550
Os.18178.1.S1_at--868--5271Chr03:1531948..1531972 (25 bp)
GAATGAGGCCCTGACAACCGAAGTC
LOC_Os03g03550
Os.18178.1.S1_at--623--5291Chr03:1531967..1531991 (25 bp)
GAAGTCCAACGCCTAAAACTCGCCA
LOC_Os03g03550
Os.18178.1.S1_at--488--9411Chr03:1532015..1532039 (25 bp)
TCGTCCAGCAGTCTAGCTCAGCAGA
LOC_Os03g03550
Os.18178.1.S1_at--797--4371Chr03:1532041..1532065 (25 bp)
CCAACTCAATGCTCAGAATCAGATG
LOC_Os03g03550
Os.18178.1.S1_at--1141--5231Chr03:1532056..1532080 (25 bp)
GAATCAGATGTTTCAACTGCAGCAG
LOC_Os03g03550
Os.18178.1.S1_at--873--1971Chr03:1532110..1532134 (25 bp)
ACTGCAGCAGTCACAACAGAACGGT
LOC_Os03g03550
Os.18178.1.S1_at--160--8291Chr03:1532172..1532196 (25 bp)
GGCATTTTGGGCTGGTTCATGGAAA
NONE
Os.18178.1.S1_at--1085--5871Chr03:1532215..1532239 (25 bp)
GAGCGCAATTCGCATATTCCTAACT
NONE
Os.18178.1.S1_at--566--6632Chr08:2141844..2141864 (21 bp)
GTTGTTAATAATCACCTTGCATTTT
NONE
Os.18178.1.S1_at--154--8991Chr03:1532297..1532321 (25 bp)
TGAACCTCCTTTTACCTTTCTATGT
NONE
Target Sequence 
GCTCACGATGATGCAGCGCGACTCGGCGGGGCTCGCGACGCAGAACAACGAGCTCAAGTTCAGGCTGCATGCCATGGAGC
AGCAGNNNNNNNNNNNNNNNGCGCTGAATGAGGCCCTGACAACCGAAGTCCAACGCCTAAAACTCGCCACCGCTGAGCTC
GGCGATTCTTNNGCTCGTCCAGCAGTCTAGCTCAGCAGATNCCAACTCAATGCTCAGAATCAGATGTTTCAACTGCAGCA
GCAGCAGGNTACGCAGATACCATTCTATCAACTGCAGCAGTCACAACAGAACGGTGCAGCGAAGAACAATGAATCAAAAG
AATGATTCCAGAGGCATTTTGGGCTGGTTCATGGAAAGAGAATATTGGTTTAGATGAGCGCAATTCGCATATTCCTAACT
CATTTGTTTTAATGTTGTTAATAATCACCTTGCATTTTTCTAGTAGGTGGTGGTTGGTGAACCTCCTTTTACCTTTCTAT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis