Browse Element(s) Details


OsAffx.30403.1.S1_s_at

Description tigr:9631.m00279
TID=OsAffx.30403.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=major facilitator superfamily protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0368011/11major facilitator superfamily protein, expressed
LOC_Os10g134401/11transporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005337molecular_functionnucleoside transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30403.1.S1_s_at--527--10372Chr10:7034706..7034730 (25 bp)
TTTTGACGAGTGCTCTAACCACCTT
LOC_Os10g13440
OsAffx.30403.1.S1_s_at--100--431Chr03:1616108..1616132 (25 bp)
ATCATCTATGTTTGTTGCTTCGTTA
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--664--6571Chr03:1616121..1616145 (25 bp)
GTTGCTTCGTTATGGGATTTGGACC
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--44--7672Chr10:7036085..7036109 (25 bp)
GGGATTTGGACCAATTCCCAATGTT
NONE
OsAffx.30403.1.S1_s_at--370--9331Chr03:1616149..1616173 (25 bp)
TCCCAATGTTCTTTGCTCAGAGCTT
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--61--10731Chr03:1616161..1616185 (25 bp)
TTGCTCAGAGCTTTTTCCTCCTAGT
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--569--7011Chr03:1616190..1616214 (25 bp)
GTAACCGTTGTATGTCTATTTGTAC
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--921--10131Chr03:1616303..1616327 (25 bp)
TATGCTGTTGTCTGCATAGTCTCCT
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--1080--4951Chr03:1616316..1616340 (25 bp)
GCATAGTCTCCTTTATATTCGTGTT
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--503--9791Chr03:1616331..1616355 (25 bp)
TATTCGTGTTAATTAAGGTGCCTGA
LOC_Os03g03680
OsAffx.30403.1.S1_s_at--1028--5571Chr03:1616359..1616383 (25 bp)
GAAAGGCATGCCTCTTGCGGTTATC
LOC_Os03g03680
Target Sequence 
TTTTGACGAGTGCTCTAACCACCTTNANGATGCTTCCTTCTATTGGTNTTGCAATNAAATGCATGGATCGTNATGGAAGA
AGATCNCTNCTTCTTTACACAATACCAATGTTGATAGTATCACTTATTATATTGNTNGTGGTCAATGTTATGAACTTANA
AGCNATNTTTGGAGCTATTTTATCCANATNNGGTGTTATCATCTATGTTTGTTGCTTCGTTATGGGATTTGGACCAATTC
CCAATGTTCTTTGCTCAGAGCTTTTTCCTCCTAGTTGTCGTAACCGTTGTATGTCTATTTGTACATTGACATTTTGGATT
GTTTCCATTATTGTCACTTATGCATTTCCTGTTATGCTAAGCTCCATAGGTCTAATTGGTGTTTGTGGGATATATGCTGT
TGTCTGCATAGTCTCCTTTATATTCGTGTTAATTAAGGTGCCTGAAACGAAAGGCATGCCTCTTGCGGTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis