Browse Element(s) Details


Os.4324.1.S1_at

Description gb:AK066570.1
DB_XREF= gi:32976588
TID=Os.4324.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071G07, full insert sequence.
FL= gb:AK109497.1 gb:AK066570.1 gb:AK104313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4324.1.S1_at--321--2811Chr03:1609054..1609078 (25 bp)
AAGTTCGCCGGGTTGACGCCTGATG
LOC_Os03g03670
Os.4324.1.S1_at--208--10771Chr03:1609042..1609066 (25 bp)
TTGACGCCTGATGAGCCCGGTGAGA
LOC_Os03g03670
Os.4324.1.S1_at--140--3051Chr03:1608992..1609016 (25 bp)
AATCGTGACGCTGCCGAAGCAGCTG
LOC_Os03g03670
Os.4324.1.S1_at--508--1511Chr03:1608975..1608999 (25 bp)
AGCAGCTGTGGAGCTCGTTCAAGGA
LOC_Os03g03670
Os.4324.1.S1_at--1063--7211Chr03:1608887..1608911 (25 bp)
GTCGAGGTGTGTTCTCTCCAGAGAT
LOC_Os03g03670
Os.4324.1.S1_at--182--6051Chr03:1608726..1608750 (25 bp)
GAGATAGTCGTTTCGCGCGAGTCGC
LOC_Os03g03670
Os.4324.1.S1_at--1071--331Chr03:1608625..1608649 (25 bp)
ATACACAAATGTCTTACACGCCCGG
LOC_Os03g03670
Os.4324.1.S1_at--683--3351Chr03:1608609..1608633 (25 bp)
CACGCCCGGGTGTATACTAATCAAA
LOC_Os03g03670
Os.4324.1.S1_at--10--1211Chr03:1608594..1608618 (25 bp)
ACTAATCAAATTGGCCTCCCGAAAG
LOC_Os03g03670
Os.4324.1.S1_at--1070--9911Chr03:1608550..1608574 (25 bp)
TACTGACGCTGTTGTCTGCATGATC
LOC_Os03g03670
Os.4324.1.S1_at--820--2311Chr03:1608519..1608543 (25 bp)
AAAGTAATACAGCACGCCGCTTTCT
LOC_Os03g03670
Target Sequence 
AAGTTCGCCGGGTTGACGCCTGATGAGCCCGGTGAGAGATTGAGCCGAGACGACGGCGATGGAATCGTGACGCTGCCGAA
GCAGCTGTGGAGCTCGTTCAAGGAGAATGGCAAGGACGAGTTCGTGTGCGAGGTAGGGTGGGTGCTGGGCCATGGCAGCG
CCATCACGTCGAGGTGTGTTCTCTCCAGAGATGGAGATGTCAAGGAGATAGTCGTTTCGCGCGAGTCGCGTGTGTCGGAG
GGAACCTGATCAGGATATCAAAATTGTCAGGTTCGATGATTTTTATGTAGAATAGAATTATAGCCATACACAAATGTCTT
ACACGCCCGGGTGTATACTAATCAAATTGGCCTCCCGAAAGGAGTATACATGAGTACATATACTGACGCTGTTGTCTGCA
TGATCTAGCTAAAAGTAATACAGCACGCCGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis