Browse Element(s) Details


Os.53684.1.A1_at

Description gb:AK073895.1
DB_XREF= gi:32983918
TID=Os.53684.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074N24, full insert sequence.
FL= gb:AK073895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0369010/11Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os10g127606/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53684.1.A1_at--865--9692Chr03:1622095..1622114 (20 bp)
TCACATTTGTTCCTGCAGCATGCGT
LOC_Os03g03690
Os.53684.1.A1_at--293--8812Chr03:1622097..1622121 (25 bp)
TGTTCCTGCAGCATGCGTATTTGGA
LOC_Os03g03690
Os.53684.1.A1_at--947--3392Chr03:1622105..1622129 (25 bp)
CAGCATGCGTATTTGGAGCATCCAA
LOC_Os03g03690
Os.53684.1.A1_at--117--1132Chr03:1622130..1622154 (25 bp)
AGTGAATTGGCAGGCTGTGCTCTCT
LOC_Os03g03690
Os.53684.1.A1_at--145--8692Chr03:1622145..1622291 (25 bp)
TGTGCTCTCTCATTCCATTTATTGC
LOC_Os03g03690
Os.53684.1.A1_at--820--3752Chr03:1622153..1622299 (25 bp)
CTCATTCCATTTATTGCGGATCAAC
LOC_Os03g03690
Os.53684.1.A1_at--650--8431Chr03:1623154..1623178 (25 bp)
GGCCATCAGTGATTTTTCCCGATAG
LOC_Os03g03690
Os.53684.1.A1_at--849--971Chr03:1623228..1623252 (25 bp)
AGGAGTGATGGCTTACGATAGGATC
LOC_Os03g03690
Os.53684.1.A1_at--539--4352Chr03:1623305..1623329 (25 bp)
CCAGATTTATGTCATTTAGCTTTCA
LOC_Os03g03690
Os.53684.1.A1_at--657--1511Chr03:1623343..1623367 (25 bp)
AGCAGTGATGGCTTACGATAGGATC
LOC_Os03g03690
Os.53684.1.A1_at--624--991NONE
AGGATCGTCCAGATTTTACTTTGTG
NONE
Target Sequence 
TCACATTTGTTCCTGCAGCATGCGTATTTGGAGCATCCAAAGTGAATTGGCAGGCTGTGCTCTCTCATTCCATTTATTGC
GGATCAACTGATTCAGTGGACTACATGATATCTGCNCCTGCTCATGGAGCTGTAATAGNAGCANGGCTTGGTGCTTGGCC
TATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATNTCTGTNACTTATGGNTCAGTCGCTGGGCATTTGATTG
GAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGNTGACTAGNTAGCCTATGGATGA
CAAGTGCCCNTGCTTTTTCNTGGCCATCAGTGATTTTTCCCGATAGTGTNCAAGTATTCTTTTTTTGGGNCCAGAGAGNN
NTNANATTGAATATAAGGAGTGATGGCTTACGATAGGATCATNCAAGTTNTACGTTGTTGACTCGTTCATNTGGAACCNT
TTGCAGNTAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGATAGGATCGTCCA
GATTTTACTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53684.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis