Browse Element(s) Details


OsAffx.12726.1.S1_at

Description tigr:9631.m00287
TID=OsAffx.12726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0376011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12726.1.S1_at--1036--4771Chr03:1652256..1652280 (25 bp)
GCTGCGTCTCAGAGGCCATGGAATA
LOC_Os03g03760
OsAffx.12726.1.S1_at--451--7391Chr03:1652230..1652254 (25 bp)
GTGAGAGCGACATGTCACCGTCGAC
LOC_Os03g03760
OsAffx.12726.1.S1_at--951--7211Chr03:1652211..1652235 (25 bp)
GTCGACGAGCCTGCAGTGCTACTAT
LOC_Os03g03760
OsAffx.12726.1.S1_at--304--5031Chr03:1652199..1652223 (25 bp)
GCAGTGCTACTATGTACGCAGCCAG
LOC_Os03g03760
OsAffx.12726.1.S1_at--3--871Chr03:1652125..1652149 (25 bp)
ATGGCGGATCACAGTGCTACGCCGC
LOC_Os03g03760
OsAffx.12726.1.S1_at--985--4811Chr03:1652089..1652113 (25 bp)
GCTCTTCCTCCAAGCTGAAATTCTT
LOC_Os03g03760
OsAffx.12726.1.S1_at--544--4771Chr03:1652005..1652029 (25 bp)
GCTGCGGCAGCGATGACAACATCCC
LOC_Os03g03760
OsAffx.12726.1.S1_at--618--671Chr03:1651996..1652017 (22 bp)
ATGACAACATCCCTTTTCAGGTCGG
LOC_Os03g03760
OsAffx.12726.1.S1_at--948--10311Chr03:1651473..1651493 (21 bp)
TTTTCAGGTCGGCACGTTTGCCCCA
LOC_Os03g03760
OsAffx.12726.1.S1_at--972--9391Chr03:1651373..1651397 (25 bp)
TCGTATCGCTCGGTGTGGTTCGAAC
LOC_Os03g03760
OsAffx.12726.1.S1_at--275--3771Chr03:1651274..1651298 (25 bp)
CTCTCGCTGGCGTTGGACACGGGAT
LOC_Os03g03760
Target Sequence 
GCTGCGTCTCAGAGGCCATGGAATACGTGAGAGCGACATGTCACCGTCGACGAGCCTGCAGTGCTACTATGTACGCAGCC
AGAGGACGACGACGATGCCGCCGGGCGCTGCTGCTGCAGCAGCCGGCGGCGATGGCGGATCACAGTGCTACGCCGCACCT
CGGTACAGCTCTTCCTCCAAGCTGAAATTCTTGGGGTTCGTGGTGACATCGGGGCCTCCTCCTCCTCGTCTTCCTCCTCC
TGCTGCCTGCTGCTGCGGCAGCGATGACAACATCCCTTTTCAGGTCGGCACGTTTGCCCCACACCGCGTCGCGCCGCCAA
CGGCGAGCTGCGGCGGCGGCGGCGGCGGCGGCCGCGCGGAGGCGCGCCCCTCGTCGTCGTATCGCTCGGTGTGGTTCGAA
CCGGCCGCCGCCGCCGCCGCGAGCAACAACGGCGTGGCGCCGGACGGCGAGCACGACGACGGCTGCTCGCTCTCGCTCTC
GCTGGCGTTGGACACGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis