Browse Element(s) Details


Os.435.1.S1_at

Description gb:AK067683.1
DB_XREF= gi:32977701
TID=Os.435.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013115G11, full insert sequence.
FL= gb:AK067683.1 gb:AK100107.1 gb:AK058762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1724011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.435.1.S1_at--445--2331Chr01:9913510..9913534 (25 bp)
AAAGTATCTGTTGTGCTGTATCTGG
LOC_Os01g17240
Os.435.1.S1_at--476--6611Chr01:9913534..9913558 (25 bp)
GTTGGGACTTTGGTCTGGAACCTAT
LOC_Os01g17240
Os.435.1.S1_at--17--8491Chr01:9913549..9913573 (25 bp)
TGGAACCTATTCTCGACCGGTGAAA
LOC_Os01g17240
Os.435.1.S1_at--525--6331Chr01:9913586..9913610 (25 bp)
GATGCTTGTATATAGCCTGCTTACA
LOC_Os01g17240
Os.435.1.S1_at--923--10731Chr01:9913658..9913682 (25 bp)
TTGCATTCGATCAACATCCATTCCA
LOC_Os01g17240
Os.435.1.S1_at--990--7351Chr01:9913684..9913708 (25 bp)
GTGAAGCTCAACTCTTTGCAGAAAC
LOC_Os01g17240
Os.435.1.S1_at--899--2011Chr01:9913712..9913736 (25 bp)
ACTACAGACTGCAAACTTTTCCGCG
LOC_Os01g17240
Os.435.1.S1_at--1149--10651Chr01:9913730..9913754 (25 bp)
TTCCGCGCAGCGTTAGACATGCAAT
LOC_Os01g17240
Os.435.1.S1_at--95--6571Chr01:9913795..9913819 (25 bp)
GATTCAGGATCTTCGCACAATTTTG
LOC_Os01g17240
Os.435.1.S1_at--779--5911Chr01:9913850..9913874 (25 bp)
GAGCAATTACCAACAGCCAGTTTTT
LOC_Os01g17240
Os.435.1.S1_at--710--7031Chr01:9913934..9913958 (25 bp)
GTACACCCCTATTATTTTTGACTTG
LOC_Os01g17240
Target Sequence 
AAAGTATCTGTTGTGCTGTATCTGGTTGGGACTTTGGTCTGGAACCTATTCTCGACCGGTGAAAAAATTATCGATTGATG
CTTGTATATAGCCTGCTTACAGTTCAAAATGGAAAGTACATACGGTTCAGTAACTGGTGAGATGAGAATTGCATTCGATC
AACATCCATTCCATGTGAAGCTCAACTCTTTGCAGAAACAGAACTACAGACTGCAAACTTTTCCGCGCAGCGTTAGACAT
GCAATTCTTGGCAGAAGAAGTTTCAAGTGTTCGAATTTTTCACATGATTCAGGATCTTCGCACAATTTTGCAAATGAAGC
ATGTGCAAGAGGTTTGAGTTGAGCAATTACCAACAGCCAGTTTTTTAGGACTCTGTAAGTATAGGTATTTCTGTACAGCT
TAGATGAAGAATCCACCATCCACCGTACACCCCTATTATTTTTGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis