Browse Element(s) Details


Os.43861.1.S1_at

Description gb:NM_187741.1
DB_XREF= gi:34902567
TID=Os.43861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1123F12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1123F12.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0692011/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43861.1.S1_at--525--6631Chr03:3491354..3491378 (25 bp)
GTTGTCTCTTTCAGAAGCCACGGGA
LOC_Os03g06920
Os.43861.1.S1_at--708--5291Chr03:3491381..3491405 (25 bp)
GAAGGTACTCGTGTTCAGCCAGTAT
LOC_Os03g06920
Os.43861.1.S1_at--1108--8691Chr03:3491405..3491429 (25 bp)
TGTGCGCTCTTTGATTTTCTTGGAA
LOC_Os03g06920
Os.43861.1.S1_at--984--9631Chr03:3491476..3491500 (25 bp)
TCAGGGTTACTGGTGGCTCAACTCA
LOC_Os03g06920
Os.43861.1.S1_at--245--6451Chr03:3491502..3491526 (25 bp)
GATCAGCGTGAGCAAGCAGTCCATA
LOC_Os03g06920
Os.43861.1.S1_at--44--6571Chr03:3491527..3491551 (25 bp)
GATTCAACAACTCACCAGATGCTAG
LOC_Os03g06920
Os.43861.1.S1_at--1076--10031Chr03:3491549..3491573 (25 bp)
TAGAGTCTTCTTTGGCTCCATCAAG
LOC_Os03g06920
Os.43861.1.S1_at--444--8471Chr03:3491600..3491624 (25 bp)
TGGCGCGTCTCGTATAGTGATCTTG
LOC_Os03g06920
Os.43861.1.S1_at--1029--691Chr03:3491632..3491656 (25 bp)
ATGAGAACCCTTCAGTGATGCGCCA
LOC_Os03g06920
Os.43861.1.S1_at--9--2451Chr03:3491691..3491715 (25 bp)
AAAATGGTGTATTGCTACCGCCTCG
LOC_Os03g06920
Os.43861.1.S1_at--1051--5611Chr03:3491856..3491880 (25 bp)
GACAGGTTCCTTGAAAGCTCTGCAT
LOC_Os03g06920
Target Sequence 
GTTGTCTCTTTCAGAAGCCACGGGAGGGAAGGTACTCGTGTTCAGCCAGTATGTGCGCTCTTTGATTTTCTTGGAAAAGC
TGGTCAGTAGAATGAAAGGATGGAAATCAGAGGTACATATTTTCAGGGTTACTGGTGGCTCAACTCAGGATCAGCGTGAG
CAAGCAGTCCATAGATTCAACAACTCACCAGATGCTAGAGTCTTCTTTGGCTCCATCAAGGCATGTGGCGAGGGCATCTC
CCTCGTTGGCGCGTCTCGTATAGTGATCTTGGATGTCCATGAGAACCCTTCAGTGATGCGCCAGGCGATTGGCCGTGCCT
ATAGGCCAGGACAGTCTAAAATGGTGTATTGCTACCGCCTCGTCGCTGCTGATTCGCCTGAGGAGGATGATCACCACACC
GCCTTCAAGAAAGAACGAGTGTCGAAGCTGTGGTTCGAGTGGAATGAGCTCTGCAGCAGTGATGATTTTGAGCTCGCAAC
GGTGGATGTTTCAGATAGCGAGGACAGGTTCCTTGAAAGCTCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis