Browse Element(s) Details


Os.21068.1.S1_at

Description gb:AK099829.1
DB_XREF= gi:32985038
TID=Os.21068.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative homeodomain protein (OJ1123F12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104D06, full insert sequence.
FL= gb:AK105752.1 gb:AK068034.1 gb:AK099829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0693011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21068.1.S1_at--872--6511Chr03:3492851..3492875 (25 bp)
GATTTCGTCGCGTGATCAAAGCACG
LOC_Os03g06930
Os.21068.1.S1_at--532--3991Chr03:3492841..3492865 (25 bp)
CGTGATCAAAGCACGGCGCGCGATG
LOC_Os03g06930
Os.21068.1.S1_at--453--1951Chr03:3492829..3492853 (25 bp)
ACGGCGCGCGATGGATGCATCGTCT
LOC_Os03g06930
Os.21068.1.S1_at--600--7611Chr03:3492783..3492807 (25 bp)
GGGAATAACGCAAGACGGCGTCAGA
LOC_Os03g06930
Os.21068.1.S1_at--765--3231Chr03:3492773..3492797 (25 bp)
CAAGACGGCGTCAGAAGCCTGGGCC
LOC_Os03g06930
Os.21068.1.S1_at--868--4231Chr03:3492736..3492760 (25 bp)
CCGTCGGCGAGGGTATACAGGTATA
LOC_Os03g06930
Os.21068.1.S1_at--941--2211Chr03:3492712..3492736 (25 bp)
ACAAGCAATATACACGTACACTCGT
LOC_Os03g06930
Os.21068.1.S1_at--837--331Chr03:3492703..3492727 (25 bp)
ATACACGTACACTCGTGTGTTGTGT
LOC_Os03g06930
Os.21068.1.S1_at--446--2291Chr03:3492455..3492479 (25 bp)
AAATGTTTCATGTTTTGTACCAGAT
LOC_Os03g06930
Os.21068.1.S1_at--643--6831Chr03:3492451..3492475 (25 bp)
GTTTCATGTTTTGTACCAGATGTTA
LOC_Os03g06930
Os.21068.1.S1_at--1035--6791Chr03:3492444..3492468 (25 bp)
GTTTTGTACCAGATGTTATAAAGCA
LOC_Os03g06930
Target Sequence 
GATTTCGTCGCGTGATCAAAGCACGGCGCGCGATGGATGCATCGTCTGCGGCGGCGGCGGNNNNNNNNNNNCGGCGGCGG
GGAATAACGCAAGACGGCGTCAGAAGCCTGGGCCGGCCGGCCGGCGCCGTCGGCGAGGGTATACAGGTATACAAGCAATA
TACACGTACACTCGTGTGTTGTGTTGGGGGGGTAAGTAAAGTGANCGAAGTAGGGGTGATCAGGGGTGTAATTGTAAAAC
TGTATATGAGAAGGGGGTGTAGCTTGCTGTAAAGATAGATTGGTATTTTTGCTAGCTTGCAGATTTCTCTACTGATTGAT
GCATGGATCATTCATATATATATATGTGGTGATGTGTTGGGTCAGATTGGACCAGATNTTCAATGGATTACTGTGAATTG
CAGCTACAAATGTTTCATGTTTTGTACCAGATGTTATAAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis