Browse Element(s) Details


Os.27134.1.A1_at

Description gb:CB662292
DB_XREF= gi:29666017
DB_XREF=OSJNEd06C19.r
CLONE=OSJNEd06C19
TID=Os.27134.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27134 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190374.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0695011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed
LOC_Os03g06980Os.18512.1.S1_at11/113+3540707..3544476expressed protein
LOC_Os03g06980OsAffx.12759.1.S1_s_at11/113+3540707..3544476expressed protein
LOC_Os03g06990OsAffx.3158.1.S1_at11/113+3545888..3547932oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os03g07000OsAffx.25000.1.S1_at11/113+3549088..3550939prolyl 4-hydroxylase, putative, expressed
LOC_Os03g07010OsAffx.3900.1.S1_at11/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.21921.1.S1_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.3584.1.S1_x_at1/113+3552527..3555974retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27134.1.A1_at--482--7451Chr03:3528918..3528942 (25 bp)
GTGTCAGTCATCAGTGTCTGGGCAT
LOC_Os03g06950
Os.27134.1.A1_at--434--4411Chr03:3528849..3528873 (25 bp)
GCCAGTGTCCGGTCGCATGAATCAG
LOC_Os03g06950
Os.27134.1.A1_at--514--411Chr03:3528829..3528853 (25 bp)
ATCAGGTGCGTGAGTTCTGGGCCAC
LOC_Os03g06950
Os.27134.1.A1_at--726--831Chr03:3528797..3528821 (25 bp)
ATGGATCGGAGGCTTGCATTCTTAA
LOC_Os03g06950
Os.27134.1.A1_at--620--4931Chr03:3528782..3528806 (25 bp)
GCATTCTTAAGCACCAGTATTTCTG
LOC_Os03g06950
Os.27134.1.A1_at--1158--6871Chr03:3528766..3528790 (25 bp)
GTATTTCTGAGCTCAAGTCACACTA
LOC_Os03g06950
Os.27134.1.A1_at--498--7091Chr03:3528750..3528774 (25 bp)
GTCACACTACGCTACTGCGATGCAT
LOC_Os03g06950
Os.27134.1.A1_at--809--1291Chr03:3528717..3528741 (25 bp)
AGATGCTGCCAGTTTGGTATCTGAT
LOC_Os03g06950
Os.27134.1.A1_at--616--8151Chr03:3528576..3528600 (25 bp)
GGAACATGTGGGTGTACTACCTCCC
LOC_Os03g06950
Os.27134.1.A1_at--757--9971Chr03:3528559..3528583 (25 bp)
TACCTCCCCGGTTGAATGATGTGGT
LOC_Os03g06950
Os.27134.1.A1_at--1012--5511Chr03:3528506..3528530 (25 bp)
GAAAAGCTCACTGGTTCAACCTGGA
LOC_Os03g06950
Target Sequence 
GTGTCAGTCATCAGTGTCTGGGCATCGCGCTGACCGGAGGAAGGGTGGGTCCAGGAAGGCAGCAGCTTCGCCAGTGTCCG
GTCGCATGAATCAGGTGCGTGAGTTCTGGGCCACAGTGCCCATGGATCGGAGGCTTGCATTCTTAAGCACCAGTATTTCT
GAGCTCAAGTCACACTACGCTACTGCGATGCATAAGGAGAAAGATGCTGCCAGTTTGGTATCTGATGTGCTTAACGAGGC
GATAAGGTTTGCCACTAGGAGTGGAAAATGGGAGTTTTTGGTATGTGGCCGGTGTGAGGAGCATTTTGCTGATGCTGAAT
CACATGTACATCATGCAATGGAGGAACATGTGGGTGTACTACCTCCCCGGTTGAATGATGTGGTGCCGGAGGAGATTGAT
GATGCCTGGGCAGAAAAGCTCACTGGTTCAACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27134.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis