Browse Element(s) Details


Os.13559.1.S1_at

Description gb:AF508799.1
DB_XREF= gi:21070356
TID=Os.13559.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13559 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) beta-galactosidase mRNA, complete cds.
PROD=beta-galactosidase
FL= gb:AF508799.1 gb:AF499737.1 gb:AK060645.1 gb:AK102192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0694011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13559.1.S1_at--7--211Chr03:3505091..3505115 (25 bp)
ATTTGCTAGCTTTGGGACACCTCTT
LOC_Os03g06940
Os.13559.1.S1_at--824--5631Chr03:3505076..3505100 (25 bp)
GACACCTCTTGGAACTTGCGGAACA
LOC_Os03g06940
Os.13559.1.S1_at--1039--7271Chr03:3505037..3505061 (25 bp)
GTGCCATTCAATTAACTCAAACTCT
LOC_Os03g06940
Os.13559.1.S1_at--900--2331Chr03:3504768..3504792 (25 bp)
AAAGATGTGTCGTCGCAATCTCTCC
LOC_Os03g06940
Os.13559.1.S1_at--111--2531Chr03:3504739..3504763 (25 bp)
AACTTTGGTGGAGATCCCTGCCCGG
LOC_Os03g06940
Os.13559.1.S1_at--1052--4811Chr03:3504681..3504705 (25 bp)
GCTCTACCGCTGCATAGGGCAATTT
LOC_Os03g06940
Os.13559.1.S1_at--384--2131Chr03:3504624..3504648 (25 bp)
ACAGGTGGGCTTGTGCTTGATCAAA
LOC_Os03g06940
Os.13559.1.S1_at--219--7051Chr03:3504565..3504589 (25 bp)
GTAAAGTATCGACGCCACATAGCTG
LOC_Os03g06940
Os.13559.1.S1_at--749--6391Chr03:3504524..3504548 (25 bp)
GATCGATTCTAGCATTCACTCAGTC
LOC_Os03g06940
Os.13559.1.S1_at--15--6171Chr03:3504486..3504510 (25 bp)
GAGGATTCTAACTCTACTGCATCTC
LOC_Os03g06940
Os.13559.1.S1_at--1043--1971Chr03:3504471..3504495 (25 bp)
ACTGCATCTCCATGAATTGTTCAGA
LOC_Os03g06940
Target Sequence 
ATTTGCTAGCTTTGGGACACCTCTTGGAACTTGCGGAACATTCCAGCAAGGGGAGTGCCATTCAATTAACTCAAACTCTG
TTCTTGAAANGAAATGCATTGGACTANAAAGATGTGTCGTCGCAATCTCTCCCAGCAACTTTGGTGGAGATCCCTGCCCG
GAGGTGATGAAAAGGGTGGCGGTTGAGGCGGTATGCTCTACCGCTGCATAGGGCAATTTCTTNGCCGAGACGAATTTAGA
GATGGCACCAAACAGGTGGGCTTGTGCTTGATCAAAGCACACAGAAAGCNATGCAGAGTAGAGTTCAACTGTAAAGTATC
GACGCCACATAGCTGTGGCTGGAGGATTAGAGATCGATTCTAGCATTCACTCAGTCGAATTTCAGATTAGAGGATTCTAA
CTCTACTGCATCTCCATGAATTGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis