Browse Element(s) Details


OsAffx.3158.1.S1_at

Description tigr:9631.m00628
TID=OsAffx.3158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=prolyl 4-hydroxylase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0699011/11oxidoreductase, 2OG-Fe oxygenase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed
LOC_Os03g06980Os.18512.1.S1_at11/113+3540707..3544476expressed protein
LOC_Os03g06980OsAffx.12759.1.S1_s_at11/113+3540707..3544476expressed protein
LOC_Os03g06990OsAffx.3158.1.S1_at11/113+3545888..3547932oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os03g07000OsAffx.25000.1.S1_at11/113+3549088..3550939prolyl 4-hydroxylase, putative, expressed
LOC_Os03g07010OsAffx.3900.1.S1_at11/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.21921.1.S1_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.3584.1.S1_x_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07020NANA3+3558912..3562217retrotransposon protein, putative, unclassified
LOC_Os03g07030NANA3+3562832..3568987retrotransposon protein, putative, unclassified
LOC_Os03g07040Os.40855.2.S1_x_at6/113+3570109..3571383hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3158.1.S1_at--101--71Chr03:3546966..3546990 (25 bp)
ATTGCGGCTTGGACCATGCTTCCAA
LOC_Os03g06990
OsAffx.3158.1.S1_at--835--4911Chr03:3546983..3547073 (25 bp)
GCTTCCAACAGAGTGCATCATCTTC
LOC_Os03g06990
OsAffx.3158.1.S1_at--261--6811Chr03:3547078..3547102 (25 bp)
GTTTTGCCAATTTTGCGATTCTCAA
LOC_Os03g06990
OsAffx.3158.1.S1_at--594--5171Chr03:3547119..3547143 (25 bp)
GAATCGATGCAAATACTACGTTACG
LOC_Os03g06990
OsAffx.3158.1.S1_at--29--10471Chr03:3547180..3547204 (25 bp)
TTAGCGGACGGCAAGGCTCAACTCG
LOC_Os03g06990
OsAffx.3158.1.S1_at--289--4831Chr03:3547195..3547219 (25 bp)
GCTCAACTCGTGAAGGTGACCGGGT
LOC_Os03g06990
OsAffx.3158.1.S1_at--278--9731Chr03:3547249..3547463 (25 bp)
TCAAGATGGGTGATTCTCTTCTCCC
LOC_Os03g06990
OsAffx.3158.1.S1_at--1001--10571Chr03:3547457..3547481 (25 bp)
TTCTCCCACAGGCTAGGTTGTCACA
LOC_Os03g06990
OsAffx.3158.1.S1_at--882--3251Chr03:3547797..3547821 (25 bp)
CAACGCGACGTTGGACACAGACAGC
LOC_Os03g06990
OsAffx.3158.1.S1_at--323--8531Chr03:3547808..3547832 (25 bp)
TGGACACAGACAGCCTGCACGGAAG
LOC_Os03g06990
OsAffx.3158.1.S1_at--1091--6551Chr03:3547876..3547900 (25 bp)
GATTCATGTGAGATCCTACAGCTAT
LOC_Os03g06990
Target Sequence 
ATTGCGGCTTGGACCATGCTTCCAACAGAGTGCATCATCTTCTATTGTTTTGCCAATTTTGCGATTCTCAAACTGTCAGA
AAACGGTGAATCGATGCAAATACTACGTTACGGGCAAGGTGAGAAATACGAGCCACACTTTGATTACATTAGCGGACGGC
AAGGCTCAACTCGTGAAGGTGACCGGGTTGCCACTGTGCTCATGTACCTGTCCAATGTCAAGATGGGTGATTCTCTTCTC
CCACAGGCTAGGTTGTCACAGCCTAAAGACGAGACATGGTCCGACTGCGCAGAACAGGGCTTCGCAGTGAAACCTGCCAA
AGGCAGTGCTGTGCTGTTCTTCAGTCTCCACCCCAACGCGACGTTGGACACAGACAGCCTGCACGGAAGCTGCCCTGTCA
TAGAAGGCGAGAAGGTGGTCGGCGACGAAGTGGATTCATGTGAGATCCTACAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis