Browse Element(s) Details


Os.43896.1.S1_at

Description gb:CB636986
DB_XREF= gi:29631977
DB_XREF=OSJNEa03A20.r
CLONE=OSJNEa03A20
TID=Os.43896.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative ripening regulated protein (OJ1217B09.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g089109/11MatE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43896.1.S1_at--839--9431Chr03:4594681..4594705 (25 bp)
TCGGATGGCTCTTCAAACTTGGCGT
LOC_Os03g08910
Os.43896.1.S1_at--106--9791Chr03:4594876..4594900 (25 bp)
TAACCATCCGCTGTGACTGGGACAA
LOC_Os03g08910
Os.43896.1.S1_at--255--991Chr03:4595001..4595022 (22 bp)
AGGAGGCCATGATCGCAAGCACACG
LOC_Os03g08910
Os.43896.1.S1_at--176--2231Chr03:4595028..4595052 (25 bp)
ACAAGTGGTCGCAAGTCCGGTGATG
LOC_Os03g08910
Os.43896.1.S1_at--961--5791Chr03:4595059..4595083 (25 bp)
GACGCACACGTTCCTGAGCTAATAT
LOC_Os03g08910
Os.43896.1.S1_at--208--9751Chr03:4595078..4595102 (25 bp)
TAATATGCTCGTCACCAGATTCTGC
LOC_Os03g08910
Os.43896.1.S1_at--366--8151NONE
GGACAAGACGATTTTTCATCCCCTG
NONE
Os.43896.1.S1_at--316--551NONE
ATCCCCTGCTAATTGTTGGTCTCTA
NONE
Os.43896.1.S1_at--393--10051Chr03:4595201..4595225 (25 bp)
TAGTATTGGCTTCGTTGCGTCCAAA
LOC_Os03g08910
Os.43896.1.S1_at--260--831Chr03:4595229..4595253 (25 bp)
ATGGTATTGGTCTTCTGGCTACCGA
LOC_Os03g08910
Os.43896.1.S1_at--874--1431Chr03:4595256..4595280 (25 bp)
AGAATTTACCATTTCGGCTGGCCGA
LOC_Os03g08910
Target Sequence 
TCGGATGGCTCTTCAAACTTGGCGTCCTGGGAATTTGGGCGGGTATGATCGGCGGAACCGCAGTGCAGACGCTAATTNTG
GCCATCATAACCATCCGCTGTGACTGGGACAAGGAGGCCATGATCGCAAGCACACGCATGGACAAGTGGTCGCAAGTCCG
GTGATGGGAGAGGACGCACACGTTCCTGAGCTAATATGCTCGTCACCAGATTCTGCCATACGAGAGGACAAGATGGTCGC
GACGAGTGAGCTGATTAACTGCATAGGTGAACAGTGGACAAGACGATTTTTCATCCCCTGCTAATTGTTGGTCTCTAGTA
TTGGCTTCGTTGCGTCCAAATTTATGGTATTGGTCTTCTGGCTACCGAAGAGAATTTACCATTTCGGCTGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis