Browse Element(s) Details


Os.43909.1.S1_at

Description gb:AK119918.1
DB_XREF= gi:37989541
TID=Os.43909.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G02, full insert sequence.
FL= gb:AK119918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43909.1.S1_at--790--4292Chr03:293133..293157 (25 bp)
CCTCTAGTGGTGTTGCCGGGCGAAA
LOC_Os03g01470
Os.43909.1.S1_at--889--5552Chr03:293154..293178 (25 bp)
GAAAGCCCAGTCGAGGTTCTTCTGA
LOC_Os03g01470
Os.43909.1.S1_at--1131--9492Chr03:293216..293240 (25 bp)
TCTCCCTAGAGACGTTGGCTTGGCA
LOC_Os03g01470
Os.43909.1.S1_at--1017--9532Chr03:293283..293307 (25 bp)
TCTAGAGTCTCTTCCTCTTGTATCA
LOC_Os03g01470
Os.43909.1.S1_at--380--9592Chr03:293298..293322 (25 bp)
TCTTGTATCAGCGTCCTAGTTTGTA
LOC_Os03g01470
Os.43909.1.S1_at--1117--6871Chr03:293431..293455 (25 bp)
GTATAGATTGTTTTGGGCGATCCCA
LOC_Os03g01470
Os.43909.1.S1_at--934--6373Chr03:293449..293473 (25 bp)
GATCCCAGTTGTAGCTCCTTTGTTG
LOC_Os03g01470
Os.43909.1.S1_at--249--892Chr03:293518..293542 (25 bp)
AGGCCTTCTCCTGGGTGAGTGCTTG
LOC_Os03g01470
Os.43909.1.S1_at--870--7732Chr03:293562..293586 (25 bp)
GGTGGTATACCTTTTCTTTTCATGG
LOC_Os03g01470
Os.43909.1.S1_at--513--3792Chr03:293594..293618 (25 bp)
CTCCCAGGGTTGTATCCTTGTATTT
LOC_Os03g01470
Os.43909.1.S1_at--1013--8972Chr03:293637..293661 (25 bp)
TGAACTTCACACTGTCTTATGCGAG
LOC_Os03g01470
Target Sequence 
CCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGACCTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGC
TTCTCTCCCTAGAGACGTTGGCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCT
CTTCCTCTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCGGTTCCATCTTCTC
TCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTTTTGTGTCGGTTGTATAGATTGTTTTGGGCGATC
CCAGTTGTAGCTCCTTTGTTGGCCTTGCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGG
TGAGTGCTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCAGGGTTGTATCCTT
GTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTATGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis