Browse Element(s) Details


Os.43914.1.S1_x_at

Description gb:BE040044
DB_XREF= gi:8335060
DB_XREF=OC10H03
TID=Os.43914.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative Nonclathrin coat protein gamma - like protein (OJ1626B05.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1259011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43914.1.S1_x_at--617--6111Chr03:6662217..6662241 (25 bp)
GAGTGCTGTCATTAGTATCCTTGGT
LOC_Os03g12590
Os.43914.1.S1_x_at--384--6911Chr03:6662231..6662255 (25 bp)
GTATCCTTGGTATGCAGCCTTGTGA
LOC_Os03g12590
Os.43914.1.S1_x_at--184--9131Chr03:6662425..6662449 (25 bp)
TGCTGTCTGGTGTGTTCATCGGCGA
LOC_Os03g12590
Os.43914.1.S1_x_at--701--3211Chr03:6662453..6662477 (25 bp)
CAAGGTTCTTGTCAGGCTATCGTTT
LOC_Os03g12590
Os.43914.1.S1_x_at--406--9971Chr03:6662470..6662494 (25 bp)
TATCGTTTGGACTGAGCGGGCCCAA
LOC_Os03g12590
Os.43914.1.S1_x_at--509--8471Chr03:6662500..6662524 (25 bp)
TGGCGATGAAGCTTGCCGTCAGGTC
LOC_Os03g12590
Os.43914.1.S1_x_at--1110--9171Chr03:6662513..6662537 (25 bp)
TGCCGTCAGGTCAGATGATCCCGAA
LOC_Os03g12590
Os.43914.1.S1_x_at--255--6371Chr03:6662549..6662573 (25 bp)
GATCCACGAGATTGTTGCCAGCGGC
LOC_Os03g12590
Os.43914.1.S1_x_at--1147--4531Chr03:6662585..6662609 (25 bp)
GCCCTGCCCCTGATATAAAATGATG
LOC_Os03g12590
Os.43914.1.S1_x_at--212--4471Chr03:6662699..6662723 (25 bp)
GCCTCGTGCGTATTATTGCTCAGGT
LOC_Os03g12590
Os.43914.1.S1_x_at--808--9671Chr03:6662767..6662791 (25 bp)
TCACCGCTCGGTTTGATTTTTTGTT
LOC_Os03g12590
Target Sequence 
GAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTT
GCCTGCTGTCTGGTGTGTTCATCGGCGACGCCAAGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCAAGGAAGTG
GCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGATCCACGAGATTGTTGCCAGCGGCTAAAGCGG
GGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCNGNAGATANTNNNNNTNACCTTTCGNGATAAAATAGTNATACTAC
NCCTATTGATNNCNCANTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAG
ATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43914.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis