Browse Element(s) Details


Os.44486.1.S1_at

Description gb:CF329169
DB_XREF= gi:33806574
DB_XREF=NACL--04-G08.g1
CLONE=NACL--04-G08
TID=Os.44486.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077B15.21 (OSJNBa0077B15.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0526011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05220OsAffx.18764.1.S1_at1/117+2356255..2356944hypothetical protein
LOC_Os07g05230OsAffx.16205.1.S1_at2/117+2357282..2359056hypothetical protein
LOC_Os07g05230OsAffx.5022.1.S1_at1/117+2357282..2359056hypothetical protein
LOC_Os07g05240OsAffx.1494.1.S1_at11/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.12213.1.S1_at2/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.5966.1.S1_at1/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05250OsAffx.16095.1.S1_at11/117+2365927..2366456hypothetical protein
LOC_Os07g05260Os.44486.1.S1_at11/117+2367490..2368947expressed protein
LOC_Os07g05270OsAffx.16096.1.S1_s_at11/117+2375734..2376125hypothetical protein
LOC_Os07g05270OsAffx.16096.1.S1_at7/117+2375734..2376125hypothetical protein
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05290Os.33267.1.S1_at11/117+2388007..2389172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44486.1.S1_at--951--2691Chr07:2368435..2368459 (25 bp)
AAGCTTGCAGCCGTCAAAGAACGCT
LOC_Os07g05260
Os.44486.1.S1_at--360--2751Chr07:2368451..2368475 (25 bp)
AAGAACGCTCTCCACAACTTTATGA
LOC_Os07g05260
Os.44486.1.S1_at--1120--2191Chr07:2368464..2368618 (25 bp)
ACAACTTTATGACGACCTCTACTGG
LOC_Os07g05260
Os.44486.1.S1_at--84--2451Chr07:2368620..2368644 (25 bp)
AAAATGCTTGTGAACGCGAGGACAG
LOC_Os07g05260
Os.44486.1.S1_at--474--191Chr07:2368683..2368707 (25 bp)
ATTTCATCGCATTCAACACATCATC
LOC_Os07g05260
Os.44486.1.S1_at--179--2471Chr07:2368697..2368721 (25 bp)
AACACATCATCTTATCTTTTCGGCT
LOC_Os07g05260
Os.44486.1.S1_at--90--4831Chr07:2368719..2368743 (25 bp)
GCTCTTCCAGCGAGCAGGACTAAGA
LOC_Os07g05260
Os.44486.1.S1_at--1086--8491Chr07:2368795..2368819 (25 bp)
TGGCATCTCTTGTAGTAGCACTTTA
LOC_Os07g05260
Os.44486.1.S1_at--538--4291Chr07:2368840..2368864 (25 bp)
CCTCTCTGCATGTAACAACACTTTG
LOC_Os07g05260
Os.44486.1.S1_at--121--3691Chr07:2368860..2368884 (25 bp)
CTTTGAATGTTATCAGTGTGCCCTG
LOC_Os07g05260
Os.44486.1.S1_at--891--7451Chr07:2368875..2368899 (25 bp)
GTGTGCCCTGAAACAAATGTAGCGA
LOC_Os07g05260
Target Sequence 
AAGCTTGCAGCCGTCAAAGAACGCTCTCCACAACTTTATGACGACCTCTACTGGAAAAATGCTTGTGAACGCGAGGACAG
GTTCGAGAGGAAGATTTTGTTTTATCAAGTCATTTTCAATTTCATCGCATTCAACACATCATCTTATCTTTTCGGCTCTT
CCAGCGAGCAGGACTAAGAGGAGTAGTGTTAATTAATATTAATTAATTAATAGCACTTTGAGTAATTATGTGGCATCTCT
TGTAGTAGCACTTTATTTATGATATCTATCTGCCCCCTCTCTGCATGTAACAACACTTTGAATGTTATCAGTGTGCCCTG
AAACAAATGTAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis