Browse Element(s) Details


Os.5966.1.S1_at

Description gb:AK072643.1
DB_XREF= gi:32982666
TID=Os.5966.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133F24, full insert sequence.
FL= gb:AK072643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1760011/11Syntaxin 51, putative, expressed
LOC_Os07g052401/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17544OsAffx.31844.1.S1_at1/118+10729375..10730390NA
LOC_Os08g17544OsAffx.17914.1.S1_x_at1/118+10729375..10730390NA
LOC_Os08g17550OsAffx.12322.1.S1_at1/118+10732950..10735261retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17580OsAffx.29253.1.S1_at10/118+10747371..10748471hypothetical protein
LOC_Os08g17589NANA8+10752403..10752955NA
LOC_Os08g17600Os.5966.1.S1_at11/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17600Os.12213.1.S1_at1/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0045045biological_processsecretory pathway
GO:0010008cellular_componentendosome membrane
GO:0005484molecular_functionSNAP receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5966.1.S1_at--971--5191Chr08:10756742..10756766 (25 bp)
GCAATTCTGAACAAGCGCACCAAAG
LOC_Os08g17600
Os.5966.1.S1_at--1009--2312Chr08:10756763..10756787 (25 bp)
AAAGGTGGCTGCTCATGCATGTGCC
LOC_Os08g17600
Os.5966.1.S1_at--1034--771Chr08:10756781..10756805 (25 bp)
ATGTGCCTGCTGCTATCTGTCGTCG
LOC_Os08g17600
Os.5966.1.S1_at--345--9471Chr08:10756796..10756820 (25 bp)
TCTGTCGTCGCAATAGTGATCCTTG
LOC_Os08g17600
Os.5966.1.S1_at--1015--4731Chr08:10756820..10756844 (25 bp)
GCTGTTATCGTGTGGCTTCTTATCA
LOC_Os08g17600
Os.5966.1.S1_at--1042--3771Chr08:10756943..10756967 (25 bp)
CTCGGCTTTGTTCTCCTGGGTGGAA
LOC_Os08g17600
Os.5966.1.S1_at--229--7871Chr08:10756969..10756993 (25 bp)
GGTTTTATCAGTGTGTGTACGTCAT
LOC_Os08g17600
Os.5966.1.S1_at--188--8751Chr08:10756984..10757008 (25 bp)
TGTACGTCATATGAGGCCCTGGCAT
LOC_Os08g17600
Os.5966.1.S1_at--1084--10111Chr08:10757022..10757046 (25 bp)
TATGTCTGAGACTACCACTCACGTG
LOC_Os08g17600
Os.5966.1.S1_at--411--10811Chr08:10757114..10757138 (25 bp)
TTGTCAATCCTTGGCATGTGCATTC
LOC_Os08g17600
Os.5966.1.S1_at--464--6671Chr08:10757183..10757207 (25 bp)
GTTGCTGTCGATATGTACAAGCTCA
LOC_Os08g17600
Target Sequence 
GCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCATGCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGC
TGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCANTGACGTTTGTTCAACGCATCACTTNTGCGCTACTC
ATCNAAATGTGCAGCCTTTTAAAGATGTACCANTGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAG
TGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGAT
TNCAATGAGAAGTATATATATGTTTTTGTGTGTGGNGATGTAACTGCTGTAGCATTGTCAATCCTTGGCATGTGCATTCA
GAAAGTGTGTGCGTTCAGATAGGATTTNATTTTTCTGTGATCGGTTGCTGTCGATATGTACAAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis