Browse Element(s) Details


Os.49498.1.S1_at

Description gb:AK063626.1
DB_XREF= gi:32973644
TID=Os.49498.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F02, full insert sequence.
FL= gb:AK063626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1761011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17580OsAffx.29253.1.S1_at10/118+10747371..10748471hypothetical protein
LOC_Os08g17589NANA8+10752403..10752955NA
LOC_Os08g17600Os.5966.1.S1_at11/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17600Os.12213.1.S1_at1/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49498.1.S1_at--229--471Chr08:10764252..10764276 (25 bp)
ATCTCGCTGGTTTTTTACGCTTGGA
LOC_Os08g17610
Os.49498.1.S1_at--18--6451Chr08:10764321..10764345 (25 bp)
GATCAAGCATGAGCATCGGTTCCAT
LOC_Os08g17610
Os.49498.1.S1_at--1158--271Chr08:10764361..10764385 (25 bp)
ATAGGTTCAGTTGCATCGCACCATT
LOC_Os08g17610
Os.49498.1.S1_at--371--2491Chr08:10764390..10764414 (25 bp)
AACAGTGTGGGACTCTCTCCGGGAA
LOC_Os08g17610
Os.49498.1.S1_at--1051--5271Chr08:10764412..10764436 (25 bp)
GAATGGTTGACTCCCTACGGTAGAG
LOC_Os08g17610
Os.49498.1.S1_at--56--6091Chr08:10764434..10764458 (25 bp)
GAGTAGATGCAGTCCATAGAGCCTT
LOC_Os08g17610
Os.49498.1.S1_at--1144--5851Chr08:10764452..10764476 (25 bp)
GAGCCTTGCAGTCTTATGGTCAGTT
LOC_Os08g17610
Os.49498.1.S1_at--807--10011Chr08:10764574..10764598 (25 bp)
TAGCAGTTCTATTCCACCTTACAAA
LOC_Os08g17610
Os.49498.1.S1_at--1022--311Chr08:10764731..10764755 (25 bp)
ATACGTGACACTTTCACTTTCCTGA
LOC_Os08g17610
Os.49498.1.S1_at--825--3671Chr08:10764747..10764771 (25 bp)
CTTTCCTGAGCTGGTCTATTTGACA
LOC_Os08g17610
Os.49498.1.S1_at--473--5611Chr08:10764768..10764792 (25 bp)
GACAAGTGTATCTCCGCTTTGTAAG
LOC_Os08g17610
Target Sequence 
ATCTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCATG
AGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGG
GAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGA
CGCCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTGTT
GATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGG
ATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGA
TACGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis