Browse Element(s) Details


OsAffx.29256.1.S1_at

Description tigr:9636.m01777
TID=OsAffx.29256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g176501/11Complex 1 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17670OsAffx.5858.1.S1_at11/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.19105.1.S1_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.29800.1.S2_x_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17680Os.9659.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_x_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29256.1.S1_at--533--3411Chr08:10792658..10792682 (25 bp)
CAGCAAAAGAGCACGGCAAGCGGGC
NONE
OsAffx.29256.1.S1_at--193--5171Chr08:10792673..10792695 (23 bp)
GCAAGCGGGCGGCACAGAGCAGGAT
NONE
OsAffx.29256.1.S1_at--775--4691NONE
GCGGCACAGAGCAGGATGCCACATT
NONE
OsAffx.29256.1.S1_at--136--5131NONE
GCACAGAGCAGGATGCCACATTAGC
NONE
OsAffx.29256.1.S1_at--977--1354Chr08:10793733..10793752 (20 bp)
AGAGCAGGATGCCACATTAGCGAAA
NONE
OsAffx.29256.1.S1_at--744--5934Chr08:10793733..10793753 (21 bp)
GAGCAGGATGCCACATTAGCGAAAC
NONE
OsAffx.29256.1.S1_at--1112--4594Chr08:10793747..10793771 (25 bp)
GCGAAACCACCAATGTATACTGCTA
NONE
OsAffx.29256.1.S1_at--586--5555Chr08:10793749..10793773 (25 bp)
GAAACCACCAATGTATACTGCTAAG
NONE
OsAffx.29256.1.S1_at--915--2635Chr08:10793751..10793775 (25 bp)
AACCACCAATGTATACTGCTAAGGG
NONE
OsAffx.29256.1.S1_at--146--1694Chr08:10793755..10793779 (25 bp)
ACCAATGTATACTGCTAAGGGACCT
NONE
OsAffx.29256.1.S1_at--1079--3198Chr11:1817230..1817249 (20 bp)
CAATGTATACTGCTAAGGGACCTCC
NONE
Target Sequence 
CAGCAAAAGAGCACGGCAAGCGGGCGGCACAGAGCAGGATGCCACATTAGCGAAACCACCAATGTATACTGCTAAGGGAC
CTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis