Browse Element(s) Details


Os.29800.1.S2_x_at

Description gb:AK071158.1
DB_XREF= gi:32981181
TID=Os.29800.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.16 (P0421H07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076C15, full insert sequence.
FL= gb:AK062335.1 gb:AK071158.1 gb:AK106018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5073011/11Poly polymerase central domain containing protein
LOC_Os08g176701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29800.1.S2_x_at--376--6992Chr02:32540946..32540970 (25 bp)
GTACGCCACCGAGCACCACAAGGAG
NONE
Os.29800.1.S2_x_at--323--9032Chr02:32541051..32541075 (25 bp)
TGCACGGATGGCCTTGAGGAGAGCA
NONE
Os.29800.1.S2_x_at--1064--4313Chr08:10800150..10800173 (24 bp)
CCTTGAGGAGAGCAGCTAGCTCGCT
NONE
Os.29800.1.S2_x_at--742--973Chr08:10800154..10800178 (25 bp)
AGGAGAGCAGCTAGCTCGCTCAGAT
NONE
Os.29800.1.S2_x_at--709--3713Chr08:10800164..10800188 (25 bp)
CTAGCTCGCTCAGATGGCCTTGAGG
NONE
Os.29800.1.S2_x_at--688--4652Chr02:32541141..32541165 (25 bp)
GCGTCTCAGCGAGGGCGACGATGTT
NONE
Os.29800.1.S2_x_at--642--9392Chr02:32541209..32541233 (25 bp)
TCGTTGCGGAGGAGCTCCTTGCTGC
NONE
Os.29800.1.S2_x_at--520--4334Chr11:7251711..7252168 (25 bp)
CCATCCCCGGCGTAGGCGTGGCAGT
NONE
Os.29800.1.S2_x_at--402--912Chr02:32541256..32541280 (25 bp)
AGGCGTGGCAGTGCACGGAGCATGC
NONE
Os.29800.1.S2_x_at--148--9373Chr10:21283618..21283640 (23 bp)
TCGACGGCGAGGTCCGCCTCCTGAG
NONE
Os.29800.1.S2_x_at--501--10873Chr08:10800406..10800425 (20 bp)
TTGGCACGGCGGACCTCACGTGGTC
LOC_Os08g17670
Target Sequence 
GTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGNGGGAGCGGGAAGCNGTCTCCGCNGCNGCCGCCTCGACGCCAA
GGATCTCNGGGCGGCNCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGT
CGGCAGCGGCGGCGGCGGCGATGTCCTNGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGNAGTCCATGGCCACGN
CGTCCTCCGTGGTGAANCNNTCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCA
GTGCACGGAGCATGCGGCNGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCNGCCTTCCCGAGCCTTGGC
ACGGCGGACCTCACGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29800.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis