Browse Element(s) Details


Os.12161.1.S1_at

Description gb:D85317.1
DB_XREF= gi:2073374
TID=Os.12161.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12161 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for farnesyl pyrophosphate synthase, complete cds.
PROD=farnesyl pyrophosphate synthase
FL= gb:AK061657.1 gb:D85317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5076011/11Farnesyl pyrophosphate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045337biological_processfarnesyl diphosphate biosynthesis
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004337molecular_functiongeranyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12161.1.S1_at--1081--7751Chr01:29488446..29488469 (24 bp)
GGTGATCCTGAGTTTATTGGCAAGA
LOC_Os01g50760
Os.12161.1.S1_at--356--2231Chr01:29488614..29488638 (25 bp)
ACAAGTGCTCATGGTTAGTTGTGCA
LOC_Os01g50760
Os.12161.1.S1_at--108--10451Chr01:29488628..29488652 (25 bp)
TTAGTTGTGCAAGCTCTCGAGCGTG
LOC_Os01g50760
Os.12161.1.S1_at--793--9371Chr01:29488644..29488668 (25 bp)
TCGAGCGTGCTGACGAGAACCAAAA
LOC_Os01g50760
Os.12161.1.S1_at--526--1691Chr01:29488767..29488791 (25 bp)
AGCCAGATCCTGAATGTGTTGCAAA
LOC_Os01g50760
Os.12161.1.S1_at--858--3051Chr01:29488817..29489095 (25 bp)
AATCTGGAGGCCGTATTTCATGAAT
LOC_Os01g50760
Os.12161.1.S1_at--369--3071Chr01:29489113..29489137 (25 bp)
AATAAGCTGATTGCCGACATCGAAG
LOC_Os01g50760
Os.12161.1.S1_at--222--4111Chr01:29489133..29489157 (25 bp)
CGAAGCACATCCGAACAAAGCAGTT
LOC_Os01g50760
Os.12161.1.S1_at--318--5411Chr01:29489224..29489248 (25 bp)
GAAGCTGTTTCATGTTTGCTTGGTA
LOC_Os01g50760
Os.12161.1.S1_at--309--8811Chr01:29489295..29489319 (25 bp)
TGTTCCCTGATGTTGTGTGTATTAT
LOC_Os01g50760
Os.12161.1.S1_at--601--7031Chr01:29489340..29489364 (25 bp)
GTACAGCGTGCTACTCCGTAAAATA
LOC_Os01g50760
Target Sequence 
GGTGATCCTGAGTTTATTGGCAAGATTGGAACGGACATTGAAGACTACAAGTGCTCATGGTTAGTTGTGCAAGCTCTCGA
GCGTGCTGACGAGAACCAAAAGCACATTCTATTTGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGG
ATCTGTATAAAGAACTTAATCTGGAGGCCGTATTTCATGAATACGAGAGGGAGAGTTACAATAAGCTGATTGCCGACATC
GAAGCACATCCGAACAAAGCAGTTCAGAATGTATTGAAATCCTTCCTGCACAAGATCTACAAGAGGCAGAAGTAGAGCTA
AGCTCATGGAGAAGCTGTTTCATGTTTGCTTGGTAACTAGAGTCGTGGGGACAAATAACTGGTAACTAGAATCATGGGGA
CNTGTTCCCTGATGTTGTGTGTATTATGGTTATGTTNGTACCGTGTAGTACAGCGTGCTACTCCGTAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis