Browse Element(s) Details


Os.19770.1.S1_at

Description gb:AK069992.1
DB_XREF= gi:32980016
TID=Os.19770.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.26 (P0421H07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038A03, full insert sequence.
FL= gb:AK069992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5081011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19770.1.S1_at--738--5631Chr01:29511134..29511158 (25 bp)
GACACGATCAAGAGCGGCGGCAGCC
LOC_Os01g50810
Os.19770.1.S1_at--161--5791Chr01:29511107..29511131 (25 bp)
GACGACCTGATGACCGAGCTGTCGT
LOC_Os01g50810
Os.19770.1.S1_at--1093--1011Chr01:29510896..29510920 (25 bp)
AGGTTTGTAGGCTGCTTCTGGCTGC
LOC_Os01g50810
Os.19770.1.S1_at--540--5631Chr01:29510848..29510872 (25 bp)
GACACGTACTGCATGTACTGCGCAC
LOC_Os01g50810
Os.19770.1.S1_at--265--7751Chr01:29510780..29510804 (25 bp)
GGTGTCTGTATGTACACTGGTCATG
LOC_Os01g50810
Os.19770.1.S1_at--399--4991Chr01:29510740..29510764 (25 bp)
GCATGCAGTGCGTATGTTTTTATCA
LOC_Os01g50810
Os.19770.1.S1_at--821--10171Chr01:29510720..29510744 (25 bp)
TATCAATATTTCTCGCAGCGGCATA
LOC_Os01g50810
Os.19770.1.S1_at--912--4691Chr01:29510703..29510727 (25 bp)
GCGGCATATATAGGCGTCTTGGTCT
LOC_Os01g50810
Os.19770.1.S1_at--62--2291Chr01:29510655..29510679 (25 bp)
AAAGTGTTGTAGTTGAGTCCGGGAT
LOC_Os01g50810
Os.19770.1.S1_at--470--6091Chr01:29510641..29510665 (25 bp)
GAGTCCGGGATATATTTGTGCATCA
LOC_Os01g50810
Os.19770.1.S1_at--962--991Chr01:29510607..29510631 (25 bp)
AGGTTGATCGCCCAGAAAGGTATAT
LOC_Os01g50810
Target Sequence 
GACACGATCAAGAGCGGCGGCAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGG
GGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACT
GCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAG
GTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTACNACNGACACGTACTGCATGTACTGCGCACACTCTGCC
NTTTTCATGTACGTANTACGTGTGNTACTANGCGNTACANTGGTGTCTGTATGTACACTGGTCATGGGNANAATGGGGAN
AGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAG
AAAGAAAAAGTGTTGTAGTTGAGTCCGGGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis