Browse Element(s) Details


Os.29842.1.S1_x_at

Description gb:AK109776.1
DB_XREF= gi:32994985
TID=Os.29842.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative high affinity nitrate transporter (P0421H07.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B08, full insert sequence.
FL= gb:AK109776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5082011/11nitrate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015706biological_processnitrate transport
GO:0048527biological_processlateral root development
GO:0016020cellular_componentmembrane
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29842.1.S1_x_at--966--7571Chr01:29517206..29517230 (25 bp)
GGGCTCATGATCATCGCGTGCACGC
LOC_Os01g50820
Os.29842.1.S1_x_at--235--631Chr01:29517239..29517263 (25 bp)
ATGCTCATCTACTTCCCGCAGTGGG
LOC_Os01g50820
Os.29842.1.S1_x_at--236--9871Chr01:29517308..29517332 (25 bp)
TACTACAGCCGGGAGTGGTCGGATC
LOC_Os01g50820
Os.29842.1.S1_x_at--172--6451Chr01:29517329..29517353 (25 bp)
GATCACGAGCGCGAGAAGGGTTTCA
LOC_Os01g50820
Os.29842.1.S1_x_at--1012--1451Chr01:29517342..29517366 (25 bp)
AGAAGGGTTTCAACGCGGCCAGCGT
LOC_Os01g50820
Os.29842.1.S1_x_at--576--9191Chr01:29517474..29517498 (25 bp)
TGCCACGGACAATAAGGTCGCGGTT
LOC_Os01g50820
Os.29842.1.S1_x_at--325--8871Chr01:29517518..29517542 (25 bp)
TGATGGTACGTGTCGTTTGACCGCG
LOC_Os01g50820
Os.29842.1.S1_x_at--149--8251Chr01:29517649..29517673 (25 bp)
GGCACTATACGCTAGTACTCCAGAT
LOC_Os01g50820
Os.29842.1.S1_x_at--1067--311Chr01:29517676..29517700 (25 bp)
ATACGGGTTTGATTTACTTCTGTGG
LOC_Os01g50820
Os.29842.1.S1_x_at--679--10471Chr01:29517689..29517713 (25 bp)
TTACTTCTGTGGATCGGCGCTTGTT
LOC_Os01g50820
Os.29842.1.S1_x_at--12--9111Chr01:29517721..29517745 (25 bp)
TGCTCCCTGTGGTTTTTGTGATGGT
LOC_Os01g50820
Target Sequence 
GGGCTCATGATCATCGCGTGCACGCTGCCCGTCATGCTCATCTACTTCCCGCAGTGGGGCGGCATGCTCGTAGGCCCGAG
GAAGGGGGCCACGGCGGAGGAGTACTACAGCCGGGAGTGGTCGGATCACGAGCGCGAGAAGGGTTTCAACGCGGCCAGCG
TGCGGTTCGCGGAGAACAGCGTGCGCGAGGGCGGGAGGTCGTCGGCGAATGGCGGACAGCCCAGGCACACCGTCCCCGTC
GACGCGTCGCCGGCCGGGGTGTGAAGAATGCCACGGACAATAAGGTCGCGGTTGTAGTACAACTGTACAAATTGATGGTA
CGTGTCGTTTGACCGCGCGCGCGCACAGTGTGGGTCGTGGCCTCGTGGGCTTAGTGGAGTACAGTGAGGGGTGTACGTGT
GTCGTGGCGCGCGCGGTCACCNCGGTGGCCTTGGGATTGGGGGGGCACTATACGCTAGTACTCCAGATATATACGGGTTT
GATTTACTTCTGTGGATCGGCGCTTGTTGGTGGTNTGCTCCCTGTGGTTTTTGTGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29842.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis