Browse Element(s) Details


OsAffx.23740.1.S1_at

Description tigr:9629.m04922
TID=OsAffx.23740.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5083011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23740.1.S1_at--336--10711Chr01:29519977..29520001 (25 bp)
TTGCGCAAAGTACTCTCAGCTGTGT
LOC_Os01g50830
OsAffx.23740.1.S1_at--530--331Chr01:29520392..29520416 (25 bp)
ATACTATTCTTTACCGAGGCTCTAT
LOC_Os01g50830
OsAffx.23740.1.S1_at--631--2831Chr01:29520456..29520480 (25 bp)
AAGTCTGGAGGCCTTTGCAGCAAGT
LOC_Os01g50830
OsAffx.23740.1.S1_at--735--6291Chr01:29520556..29520580 (25 bp)
GATGATACCGCTTTTGACCATGGGA
LOC_Os01g50830
OsAffx.23740.1.S1_at--759--6911Chr01:29520667..29520691 (25 bp)
GTATGCACGGCATCGGAAATCACCT
LOC_Os01g50830
OsAffx.23740.1.S1_at--350--5591Chr01:29520682..29520706 (25 bp)
GAAATCACCTTCTTGGCCAGTTATC
LOC_Os01g50830
OsAffx.23740.1.S1_at--84--4431Chr01:29520697..29520721 (25 bp)
GCCAGTTATCCCTATCATCTTTAAG
LOC_Os01g50830
OsAffx.23740.1.S1_at--289--1491Chr01:29521315..29521339 (25 bp)
AGCACTCACCTTTTCTGTTAGAGGA
LOC_Os01g50830
OsAffx.23740.1.S1_at--20--1751Chr01:29521358..29521382 (25 bp)
ACCTTGGCTATCATGAACTCCTTAG
LOC_Os01g50830
OsAffx.23740.1.S1_at--412--5931Chr01:29521383..29521407 (25 bp)
GAGCATTATTGACTGTCCTCCAGAT
LOC_Os01g50830
OsAffx.23740.1.S1_at--1009--7671Chr01:29521413..29521437 (25 bp)
GGGTTATCTGCGTATGGTCTCTATC
LOC_Os01g50830
Target Sequence 
TTGCGCAAAGTACTCTCAGCTGTGTTTGAGGATTCCTTGTTGACAGATTTTCTTATACTATTCTTTACCGAGGCTCTATT
TTATGGAGGAGTCGCAATTTTTGTCCTGTTGATTGATAAAGTCTGGAGGCCTTTGCAGCAAGTAGCTCCTAAGAGTTATA
TCTGGTCAAAATCCAGATTTTTCCGTATTTCTTCAGTAACAACGATGGTTTTGAGCTTGATGATACCGCTTTTGACCATG
GGAATGGTCTGGCCCTGGACTGGACCAGCAGCTTCAGCTACTCTTGCCCCTTATCTGGTTGGTCTTGTTGTACAATTCGC
ATTCGAGCAGTATGCACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGATCTACAGGCTTCACC
AACTGAACAGGGCAGCTCAGCTGGTGACAGCACTCACCTTTTCTGTTAGAGGAACAGAGGCAACAAACCAAACCTTGGCT
ATCATGAACTCCTTAGGAGCATTATTGACTGTCCTCCAGATTCTTGGGGTTATCTGCGTATGGTCTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis