Browse Element(s) Details


Os.1880.2.S1_a_at

Description gb:AK068954.1
DB_XREF= gi:32978978
TID=Os.1880.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.29 (P0421H07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001I20, full insert sequence.
FL= gb:AK068954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5084011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1880.2.S1_a_at--1131--1511Chr01:29529627..29529651 (25 bp)
AGCAGAGTCGTCATCCAAGCGTGGG
LOC_Os01g50840
Os.1880.2.S1_a_at--577--1151Chr01:29529622..29529646 (25 bp)
AGTCGTCATCCAAGCGTGGGAAGTG
LOC_Os01g50840
Os.1880.2.S1_a_at--520--3051Chr01:29529415..29529439 (25 bp)
AATCGGAGCCGTGCTCTACGAGCTA
LOC_Os01g50840
Os.1880.2.S1_a_at--941--3931Chr01:29529406..29529430 (25 bp)
CGTGCTCTACGAGCTACGTGACGGG
LOC_Os01g50840
Os.1880.2.S1_a_at--870--6231Chr01:29529362..29529386 (25 bp)
GATGGGAATGGGTGCCGTGCGCGCC
LOC_Os01g50840
Os.1880.2.S1_a_at--386--1671Chr01:29529256..29529280 (25 bp)
AGCCGCATGTACAACCGCACAGTGA
LOC_Os01g50840
Os.1880.2.S1_a_at--1119--2191Chr01:29529246..29529270 (25 bp)
ACAACCGCACAGTGAACTCATGACT
LOC_Os01g50840
Os.1880.2.S1_a_at--165--9831Chr01:29529173..29529197 (25 bp)
TAAAGTCCCGCGCAGTAGCACGGCT
LOC_Os01g50840
Os.1880.2.S1_a_at--429--1191Chr01:29529160..29529184 (25 bp)
AGTAGCACGGCTACTCGCTAGCGTA
LOC_Os01g50840
Os.1880.2.S1_a_at--864--1931Chr01:29529154..29529178 (25 bp)
ACGGCTACTCGCTAGCGTACATAAA
LOC_Os01g50840
Os.1880.2.S1_a_at--764--1971Chr01:29529148..29529172 (25 bp)
ACTCGCTAGCGTACATAAAAAATTA
LOC_Os01g50840
Target Sequence 
AGCAGAGTCGTCATCCAAGCGTGGGAAGTGGACGGCGACGGCCTCGCGCTGTCCCGTGGCGCGGCGCACGACACGATGCC
GGGGGAGATGTCCGAGAGGCTGTTCCCCCGTGACGAGGACGGCGATGAGGAGGACGAAGAGGAGATGTCGCCGTCGATCG
GGGTGTGCGGCAACGCCGCCGGAGGGTACGTGTACAATGCGGCCGACCCGACAATCGGAGCCGTGCTCTACGAGCTACGT
GACGGGGTGGGCAGCGCCGTGGAGCGATGGGAATGGGTGCCGTGCGCGCCCTCGGTCGAGGCCGAGCCGTTGGGACGCTT
CATCCTCGCGTGTTCGCCGGTGGGGCTGGACGAGCTCGCGCGTGGTCAACCAGCCGCATGTACAACCGCACAGTGAACTC
ATGACTGCCGACGCCCGTCCAAAGCAAGTTAACCTCAAAGGTTGCTTTTGTAAATAAAGTCCCGCGCAGTAGCACGGCTA
CTCGCTAGCGTACATAAAAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1880.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis