Browse Element(s) Details


Os.38379.1.S1_at

Description gb:AK065538.1
DB_XREF= gi:32975556
TID=Os.38379.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.38379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative clathrin-associated protein (P0421H07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030K02, full insert sequence.
FL= gb:AK065538.1 gb:AK060762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5077011/11Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38379.1.S1_at--774--3211Chr01:29496529..29496551 (23 bp)
CAAGGATTACATGTGCAGAGCTGAA
LOC_Os01g50770
Os.38379.1.S1_at--224--5051Chr01:29496541..29496565 (25 bp)
GCAGAGCTGAATTTAGTCTTCCAAG
LOC_Os01g50770
Os.38379.1.S1_at--668--5291Chr01:29496596..29496620 (25 bp)
GAAGGCACCAATACGAGTGAAATTT
LOC_Os01g50770
Os.38379.1.S1_at--274--6051Chr01:29496621..29496645 (25 bp)
GAGATACCATATTTCACTGTGTCGG
LOC_Os01g50770
Os.38379.1.S1_at--12--231Chr01:29496629..29496653 (25 bp)
ATATTTCACTGTGTCGGGTATTCAG
LOC_Os01g50770
Os.38379.1.S1_at--948--6971Chr01:29496783..29496807 (25 bp)
GTACCAGGCGCTTCCTTGGGTTAGA
LOC_Os01g50770
Os.38379.1.S1_at--857--4571Chr01:29496790..29496814 (25 bp)
GCGCTTCCTTGGGTTAGATACATTA
LOC_Os01g50770
Os.38379.1.S1_at--732--6791Chr01:29496850..29496874 (25 bp)
GTTATCTCTGATATGGCTGCTCAAA
LOC_Os01g50770
Os.38379.1.S1_at--440--8331Chr01:29496864..29496888 (25 bp)
GGCTGCTCAAAGATTTTGATGCTAA
LOC_Os01g50770
Os.38379.1.S1_at--518--8851Chr01:29496880..29496904 (25 bp)
TGATGCTAAATTTCAACTCCCAAGA
LOC_Os01g50770
Os.38379.1.S1_at--561--9711Chr01:29496892..29496916 (25 bp)
TCAACTCCCAAGATACATGTTTGAT
LOC_Os01g50770
Target Sequence 
CAAGGATTACATGTGCAGAGCTGAATTTAGTCTTCCAAGTATAACTGCAGAAGAAGCAGCTCCTGAAAAGAAGGCACCAA
TACGAGTGAAATTTGAGATACCATATTTCACTGTGTCGGGTATTCAGGTTCGCTATCTGAAGATCATTGAAAAGAGTGGG
TACCAGGCGCTTCCTTGGGTTAGATACATTACAATGGCTGGTGAATACGAACTGAGACTTATATGAGTTATCTCTGATAT
GGCTGCTCAAAGATTTTGATGCTAAATTTCAACTCCCAAGATACATGTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis