Browse Element(s) Details


Os.33605.1.S1_at

Description gb:AK099917.1
DB_XREF= gi:32985126
TID=Os.33605.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.18 (P0421H07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116I02, full insert sequence.
FL= gb:AK099917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5075011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33605.1.S1_at--582--10591Chr01:29481592..29481616 (25 bp)
TTCGGCCCGGTCGAAACTACTACAG
LOC_Os01g50750
Os.33605.1.S1_at--224--4511Chr01:29481596..29481620 (25 bp)
GCCCGGTCGAAACTACTACAGTACT
LOC_Os01g50750
Os.33605.1.S1_at--464--7791Chr01:29481600..29481624 (25 bp)
GGTCGAAACTACTACAGTACTGTAT
LOC_Os01g50750
Os.33605.1.S1_at--365--9871Chr01:29481612..29481636 (25 bp)
TACAGTACTGTATTCTAGGCCTGGC
LOC_Os01g50750
Os.33605.1.S1_at--1113--1171Chr01:29481615..29481639 (25 bp)
AGTACTGTATTCTAGGCCTGGCTCA
LOC_Os01g50750
Os.33605.1.S1_at--211--9931Chr01:29481617..29481641 (25 bp)
TACTGTATTCTAGGCCTGGCTCAGA
LOC_Os01g50750
Os.33605.1.S1_at--598--6871Chr01:29481621..29481645 (25 bp)
GTATTCTAGGCCTGGCTCAGAGTGG
LOC_Os01g50750
Os.33605.1.S1_at--480--10091Chr01:29481627..29481651 (25 bp)
TAGGCCTGGCTCAGAGTGGGCCAAC
LOC_Os01g50750
Os.33605.1.S1_at--491--4271Chr01:29481631..29481655 (25 bp)
CCTGGCTCAGAGTGGGCCAACATTT
LOC_Os01g50750
Os.33605.1.S1_at--191--3751Chr01:29481636..29481660 (25 bp)
CTCAGAGTGGGCCAACATTTTCGGC
LOC_Os01g50750
Os.33605.1.S1_at--604--8411Chr01:29481645..29481669 (25 bp)
GGCCAACATTTTCGGCCCAGTTTAT
LOC_Os01g50750
Target Sequence 
TTCGGCCCGGTCGAAACTACTACAGTACTGTATTCTAGGCCTGGCTCAGAGTGGGCCAACATTTTCGGCCCAGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis