Browse Element(s) Details


Os.9659.1.S1_at

Description gb:AK100085.1
DB_XREF= gi:32985294
TID=Os.9659.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002O21, full insert sequence.
FL= gb:AK100085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1768011/11Stromal cell-derived factor 2-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17670OsAffx.5858.1.S1_at11/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.19105.1.S1_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.29800.1.S2_x_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17680Os.9659.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_x_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein
LOC_Os08g17700NANA8+10825619..10829256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17710NANA8+10831436..10833311retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9659.1.S1_at--648--4971Chr08:10805082..10805106 (25 bp)
GCATGCTTCTCCCATTACGGGAAAT
LOC_Os08g17680
Os.9659.1.S1_at--112--3291Chr08:10804253..10804277 (25 bp)
CAAAAATAGCTGTATTGCAGGGCAG
LOC_Os08g17680
Os.9659.1.S1_at--479--7771Chr08:10804217..10804241 (25 bp)
GGTGACATGATGAACCCATTAGTAT
LOC_Os08g17680
Os.9659.1.S1_at--481--1191Chr08:10804197..10804221 (25 bp)
AGTATGGTGCTTGTACGATTCAAAA
LOC_Os08g17680
Os.9659.1.S1_at--860--2551Chr08:10804165..10804189 (25 bp)
AACGTTGTAACCATTAGAATACCAG
LOC_Os08g17680
Os.9659.1.S1_at--1006--10011Chr08:10804151..10804175 (25 bp)
TAGAATACCAGTTCAGTTCATTTTG
LOC_Os08g17680
Os.9659.1.S1_at--1125--3431Chr08:10804138..10804162 (25 bp)
CAGTTCATTTTGAGCTATTAGAGCA
LOC_Os08g17680
Os.9659.1.S1_at--616--7871Chr08:10804094..10804118 (25 bp)
GGTTTAGCTGAAGATTGCCACTTAT
LOC_Os08g17680
Os.9659.1.S1_at--233--5351Chr08:10804085..10804109 (25 bp)
GAAGATTGCCACTTATTCCCGGTCT
LOC_Os08g17680
Os.9659.1.S1_at--754--7811Chr08:10804065..10804089 (25 bp)
GGTCTCCCGGTGTACAAAGAAGGAT
LOC_Os08g17680
Os.9659.1.S1_at--134--9351Chr08:10804028..10804052 (25 bp)
TCGCTCTTATTGTTTTCGGAATTCT
LOC_Os08g17680
Target Sequence 
GCATGCTTCTCCCATTACGGGAAATTTAGAGGTTAGTTGCTTTGGCGGTGAAAATGAATCAGACACTGGAGACTACTGGA
GGCTCGAGATTGAGGGCAGTGGGAAGTCTTGGCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTAT
CTGCATAGCCATGATAGGAAGTACACCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACAAACGTCCTGA
CAATGTCTGGCTTGCAGCTGAAGGAGTCTACCTCCCGGTGAACCAGCAAAAATAGCTGTATTGCAGGGCAGCAGGGATGA
GAGGTGACATGATGAACCCATTAGTATGGTGCTTGTACGATTCAAAAGTATTAAAACGTTGTAACCATTAGAATACCAGT
TCAGTTCATTTTGAGCTATTAGAGCAACTTTTGTTGTGTAAGAATGGTTTAGCTGAAGATTGCCACTTATTCCCGGTCTC
CCGGTGTACAAAGAAGGATTATCTCTCTGGNTCGCTCTTATTGTTTTCGGAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis