Browse Element(s) Details


Os.47390.2.S1_at

Description gb:AK111033.1
DB_XREF= gi:32996242
TID=Os.47390.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H11, full insert sequence.
FL= gb:AK111033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g176509/11Complex 1 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17670OsAffx.5858.1.S1_at11/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.19105.1.S1_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.29800.1.S2_x_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17680Os.9659.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_x_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47390.2.S1_at--620--3931NONE
CGGCGAGGATCTGGCTTTGATGGTT
NONE
Os.47390.2.S1_at--854--131NONE
ATTAATAAGGCTTCTTCTTTGCACT
NONE
Os.47390.2.S1_at--618--2011Chr08:10789880..10789904 (25 bp)
ACTAGCAAAGTGTAAACCATGTGTT
LOC_Os08g17650
Os.47390.2.S1_at--93--2651Chr08:10789866..10789890 (25 bp)
AACCATGTGTTTGGTGTTTGCACAA
LOC_Os08g17650
Os.47390.2.S1_at--494--6431Chr08:10789788..10789812 (25 bp)
GATCATCATGTATCAAAACTCTTTA
LOC_Os08g17650
Os.47390.2.S1_at--230--2531Chr08:10789772..10789796 (25 bp)
AACTCTTTATGCAGCAACTTTCTGG
LOC_Os08g17650
Os.47390.2.S1_at--42--5051Chr08:10789762..10789786 (25 bp)
GCAGCAACTTTCTGGAGTTCGTTCA
LOC_Os08g17650
Os.47390.2.S1_at--35--8051Chr08:10789749..10789773 (25 bp)
GGAGTTCGTTCATTTGGCTATGTGA
LOC_Os08g17650
Os.47390.2.S1_at--432--8311Chr08:10789734..10789758 (25 bp)
GGCTATGTGAATTCTAGATGGATTT
LOC_Os08g17650
Os.47390.2.S1_at--761--1311Chr08:10789719..10789743 (25 bp)
AGATGGATTTCCTTGGCACCTAATT
LOC_Os08g17650
Os.47390.2.S1_at--974--10671Chr08:10789711..10789735 (25 bp)
TTCCTTGGCACCTAATTTTATTATG
LOC_Os08g17650
Target Sequence 
CGGCGAGGATCTGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAG
GTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGT
CTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGA
AGANACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGCTTCTTCTTTGCAC
TAGCAAAGTGTAAACCATGTGTTTGGTGTTTGCACAAGGAGGAAATGAAATAGGAATGTATTTCTTTTGATGGNATGCAA
GGAACATAATGATCATCATGTATCAAAACTCTTTATGCAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTA
GATGGATTTCCTTGGCACCTAATTTTATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47390.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis