Browse Element(s) Details


OsAffx.5858.1.S1_at

Description tigr:9636.m01778
TID=OsAffx.5858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17670OsAffx.5858.1.S1_at11/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.19105.1.S1_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.29800.1.S2_x_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17680Os.9659.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_x_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein
LOC_Os08g17700NANA8+10825619..10829256retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5858.1.S1_at--496--4892Chr08:10801352..10801376 (25 bp)
GCTTAATATCCCAATCTCCCAGAAA
LOC_Os08g17670
OsAffx.5858.1.S1_at--406--2331Chr08:10801379..10801403 (25 bp)
AAAGAATCTGGCCACGGTTTCCACT
LOC_Os08g17670
OsAffx.5858.1.S1_at--127--1511Chr08:10801463..10801487 (25 bp)
AGCATCGATATGCTCTTTTGCGCCG
LOC_Os08g17670
OsAffx.5858.1.S1_at--1097--7211Chr08:10801525..10801549 (25 bp)
GTCGAACTGTGGCTAAGGCGCTCCA
LOC_Os08g17670
OsAffx.5858.1.S1_at--156--6491Chr08:10801562..10801586 (25 bp)
GATACGGGACATTTCTTCCGCACTG
LOC_Os08g17670
OsAffx.5858.1.S1_at--774--10651Chr08:10801577..10801601 (25 bp)
TTCCGCACTGGGTGTCCAAGCAATT
LOC_Os08g17670
OsAffx.5858.1.S1_at--938--2632Chr08:10801614..10801638 (25 bp)
AACCTTTGGATGACACTCAGATCGG
LOC_Os08g17670
OsAffx.5858.1.S1_at--238--9652Chr08:10801630..10801654 (25 bp)
TCAGATCGGTGCAGCTCTCAGATGA
LOC_Os08g17670
OsAffx.5858.1.S1_at--981--6291Chr08:10801650..10801674 (25 bp)
GATGAGCCTAACTCGTTGTCTTGGA
LOC_Os08g17670
OsAffx.5858.1.S1_at--760--7651Chr08:10801678..10801702 (25 bp)
GGGAGTCCTCAGACGAGTATTCTTC
LOC_Os08g17670
OsAffx.5858.1.S1_at--721--6872Chr11:2108398..2108418 (21 bp)
GTATTCTTCCCACTTGGCATATCAA
NONE
Target Sequence 
GCTTAATATCCCAATCTCCCAGAAAGAAAAGAATCTGGCCACGGTTTCCACTTTAATTTCGGTGGGAGATGGGAATACGG
CGCTGCTCTGGGAGGACTGTTGGATAGATGGAGCATCGATATGCTCTTTTGCGCCGGCGGTTTATGCTGCTGTCCCTGCG
CGTCTGCGGAGTCGTCGAACTGTGGCTAAGGCGCTCCACGACAGGAGTTGGATACGGGACATTTCTTCCGCACTGGGTGT
CCAAGCAATTTTGGAGTACATCAACCTTTGGATGACACTCAGATCGGTGCAGCTCTCAGATGAGCCTAACTCGTTGTCTT
GGAGATGGGAGTCCTCAGACGAGTATTCTTCCCACTTGGCATATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis