Browse Element(s) Details


OsAffx.5859.1.S1_x_at

Description tigr:9636.m01779
TID=OsAffx.5859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MIR domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1768011/11Stromal cell-derived factor 2-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17670OsAffx.5858.1.S1_at11/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.19105.1.S1_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17670Os.29800.1.S2_x_at1/118+10800243..10801763hypothetical protein
LOC_Os08g17680Os.9659.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17680OsAffx.5859.1.S1_x_at11/118+10803975..10806991Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein
LOC_Os08g17700NANA8+10825619..10829256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17710NANA8+10831436..10833311retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5859.1.S1_x_at--635--5611Chr08:10806558..10806582 (25 bp)
GACAACGTCGTCGAGGTTGGTGTTT
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--255--6631Chr08:10806543..10806567 (25 bp)
GTTGGTGTTTCGACTTCCTCTGTGC
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--1152--3771Chr08:10806361..10806550 (25 bp)
CTCTGTGCCTATTACCTACGGATCG
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--406--2231Chr08:10806309..10806333 (25 bp)
AAATTTCGGTTGCATTCCCACGATG
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--838--7291Chr08:10806285..10806309 (25 bp)
GTGCCCTATGGATCTGGAAGCGGTC
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--729--5411Chr08:10806269..10806293 (25 bp)
GAAGCGGTCAGCAATCGGTCACCAG
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--877--7371Chr08:10805189..10805213 (25 bp)
GTGAGACCGCAACCAGATACTTCAG
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--40--8651Chr08:10804731..10805163 (25 bp)
TGGGACAGTTGTTAGTTGCTTTGGC
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--376--1431Chr08:10804528..10804552 (25 bp)
AGAAAATCCGGTTGCGCCATGTTGA
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--835--6271Chr08:10804478..10804502 (25 bp)
GATAGGAAGTACACCCGCATTGCTG
LOC_Os08g17680
OsAffx.5859.1.S1_x_at--629--7751Chr08:10804322..10804346 (25 bp)
GGTGTTGGCGACAAACGTCCTGACA
LOC_Os08g17680
Target Sequence 
GACAACGTCGTCGAGGTTGGTGTTTCGACTTCCTCTGTGCCTATTACCTACGGATCGGCGATCAAATTGATGCATGAGAG
GACCAAATTTCGGTTGCATTCCCACGATGTGCCCTATGGATCTGGAAGCGGTCAGCAATCGGTCACCAGTTTCCCCAACG
TGGACGACTCCAATAGCTACTGGATAGTGAGACCGCAACCAGATACTTCAGCAAAACAAGGTGATCCCATAACACATGGG
ACAGTTGTTAGTTGCTTTGGCGGTGAAAATGAATCAGACACTGGAGACTACTGGAGGCTCGAGATTGAGGGCAGTGGGAA
GTCTTGGCGGCAAAACCAGAAAATCCGGTTGCGCCATGTTGATACTGGTGGTTATCTGCATAGCCATGATAGGAAGTACA
CCCGCATTGCTGGTGGACAGCAAGAGGTATGTGGTGTTGGCGACAAACGTCCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5859.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis