Browse Element(s) Details


OsAffx.5857.1.S1_at

Description tigr:9636.m01774
TID=OsAffx.5857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17580OsAffx.29253.1.S1_at10/118+10747371..10748471hypothetical protein
LOC_Os08g17589NANA8+10752403..10752955NA
LOC_Os08g17600Os.5966.1.S1_at11/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17600Os.12213.1.S1_at1/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein
LOC_Os08g17620OsAffx.29254.1.S1_at11/118+10765837..10766325hypothetical protein
LOC_Os08g17630OsAffx.5857.1.S1_at11/118+10770737..10770949hypothetical protein
LOC_Os08g17640NANA8+10775143..10776063Zinc finger, C2H2 type family protein
LOC_Os08g17650Os.47390.1.S1_at11/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650Os.47390.2.S1_at9/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.32336.1.A1_at2/118+10789480..10797500Complex 1 protein containing protein, expressed
LOC_Os08g17650OsAffx.29256.1.S1_at1/118+10789480..10797500Complex 1 protein containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5857.1.S1_at--386--3771Chr08:10770845..10770869 (25 bp)
CTCTGGCCGGATCTTTCGCTGCATG
LOC_Os08g17630
OsAffx.5857.1.S1_at--155--8471Chr08:10770848..10770872 (25 bp)
TGGCCGGATCTTTCGCTGCATGCAG
LOC_Os08g17630
OsAffx.5857.1.S1_at--1060--8411Chr08:10770849..10770873 (25 bp)
GGCCGGATCTTTCGCTGCATGCAGT
LOC_Os08g17630
OsAffx.5857.1.S1_at--1135--4251Chr08:10770851..10770875 (25 bp)
CCGGATCTTTCGCTGCATGCAGTTG
LOC_Os08g17630
OsAffx.5857.1.S1_at--714--7951Chr08:10770853..10770877 (25 bp)
GGATCTTTCGCTGCATGCAGTTGCA
LOC_Os08g17630
OsAffx.5857.1.S1_at--1145--6411Chr08:10770854..10770878 (25 bp)
GATCTTTCGCTGCATGCAGTTGCAG
LOC_Os08g17630
OsAffx.5857.1.S1_at--573--9552Chr08:10770856..10770880 (25 bp)
TCTTTCGCTGCATGCAGTTGCAGAG
LOC_Os08g17630
OsAffx.5857.1.S1_at--432--10291Chr08:10770858..10770882 (25 bp)
TTTCGCTGCATGCAGTTGCAGAGGA
LOC_Os08g17630
OsAffx.5857.1.S1_at--673--5051Chr08:10770891..10770915 (25 bp)
GCAGCACGGCACTGCGTTGCGACGA
LOC_Os08g17630
OsAffx.5857.1.S1_at--223--5111Chr08:10770894..10770918 (25 bp)
GCACGGCACTGCGTTGCGACGACGA
LOC_Os08g17630
OsAffx.5857.1.S1_at--939--3331Chr08:10770895..10770919 (25 bp)
CACGGCACTGCGTTGCGACGACGAT
LOC_Os08g17630
Target Sequence 
CTCTGGCCGGATCTTTCGCTGCATGCAGTTGCAGAGGATGCCGCCGGCAGCACGGCACTGCGTTGCGACGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis